Array 1 505-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSKO01001382.1 Escherichia coli strain 90 E12_S3_L001_R1_001_(paired)_contig_1382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504 29 79.3 32 ....CG.....T.....CA.........T ACGTTGTCATGGGTGCTGCTGTTGCAGAGCCA 443 28 93.1 33 ..................T....-..... TCGTAGGTACACGGATTTGTATACCGGACGCCC 382 29 93.1 32 .C..G........................ GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 321 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 260 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 199 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 138 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 95.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTCACCATCATTT # Right flank : GGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5834-6472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSKO01000457.1 Escherichia coli strain 90 E12_S3_L001_R1_001_(paired)_contig_457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5834 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 5895 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 5956 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 6017 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6078 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 6139 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 6200 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 6261 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 6322 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 6383 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 6444 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : ACTGCAAAGTTCTTCACGCTGGTTTTTATGCAGAGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 395-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSKO01000507.1 Escherichia coli strain 90 E12_S3_L001_R1_001_(paired)_contig_507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 394 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 332 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 271 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 210 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 149 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 88 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCACTGACAGTGAAGCTGAATTACAGGCAGAG # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //