Array 1 8419-8595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035707.1 Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 8419 37 100.0 32 ..................................... AGGTCGGCGTGTCCTACCGCGGAGACCCAGTT 8488 37 100.0 34 ..................................... CCGCAACTGCGCGGCAGTAGCAACAAAACCCTCC 8559 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : GTGGACATGATGGCGGGGCGGTGGGTCAGCCGATGTAGAAGAATTCGGGATCGGCCGGGGCCTCGCCCGTGCCGAGCACCAGGGTGCGCTGGCGCGGGTCGAGCCGCAGCAGGAAGAAGCGGTCGGTGGCCTCGTCGATGAGCCAGACGATCTGCTCGAGCACGCGGCGCTTCTCGGCCTCGGTCAGCCAGATCTCGTGCACCGACTTCTGCCCGCCGGTGGCGAAGCCCCGCAGCAGCTTGAGCGCACCGGCGCGGCAGCGGTTGTCGCGGATGTCGTAGGCGGCCAGGTAGAGGTGTCGCAGCGGGGTGCTCATCGGGAACAGGCTCCGGTGTTCGCAGGCCTTCATGGTCGCCGCGAACCGGTCTGCCGACTTCCGGCGGCAAGGTTGCCGCGCCCGAAGTGAACACGCCCGCCCTGCCGCTACAATGCGCCCTGCCGGTTCAGACCAGCCTGTGGACGAGCCCCATGCCAAGAGTCAGCTTTTCGCTCCGTCGTTT # Right flank : CGCTGACGGCTTTCCGGGCGTCAGTGCGCATCGCTTGGCGTCGTCGCCACGCTGCGTCACCAGCTCGTCCCATGCCCGCGTCAAGATGCCTCGCACAGGCGCAGGCACATGCGCACTCCTGCCGAAACTGAAGCTTCACCGAATCGGACCGCAGGGTGAATCGCACCGCAGATGCTATGCTGCGCAACACCCCGATGCTGCTCCCGCCCGATTCATGACCCTGAAGTGCCACCTGGCGCGCCTGATGGCGCGCGACCGTCTGCGCGTGTCGGACGTCGCGCGTGCGACCGGCCTGAACCGCAGCACCATCACCGCGCTGGTCCACGACCGGGCCACGCGGGTGGAGCTGCCCGATGTCGAGGCGCTGTGCCGGGTGCTGCACTGCGGTGTGGGCGATCTGTTCGAGTACAGCGCGGACGACCAGCCGGCCGAGGCCGCTGCCCAGGAGATGCGGTCATGAGTCTCGGCGCGAACCGCTGGCATGTCATCGCGCAGTCCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2043699-2039928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035708.1 Sphaerotilus natans subsp. sulfidivorans strain D-507 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 2043698 28 100.0 32 ............................ CCGACGATGATGCGGACGCGGCGGCGAATCAT 2043638 28 100.0 32 ............................ AGGGATAGCGGCAGCGAGTGCCCCGACGATGA 2043578 28 100.0 32 ............................ AGAGTGCGCCGATCACGCGCAGCGCGTCGCAC 2043518 28 100.0 32 ............................ ACGCACGGAAGCCCCCCTTCGGGGTGTGTCTG 2043458 28 100.0 32 ............................ TGCGCCAGCGCAGTGAGTTGCGGCAGCAGTGT 2043398 28 100.0 32 ............................ TGACCGCGGCTCGGACCATGCTCACCGGGCGA 2043338 28 100.0 32 ............................ CCATGCGCTCGACGATGGTCAGATCGCCGTCG 2043278 28 100.0 32 ............................ CGAGACGCTGGGCACGCTGTCCCGGCCCTGGG 2043218 28 96.4 32 .....................C...... ACCGCCAGGCCCGCAGTCCAGACCATCACGAC 2043158 28 100.0 33 ............................ TCGTCGAGCGGCACCTGGGCGTCATCAGTGGCG 2043097 28 100.0 32 ............................ TATGAGCTACAGACGGGCGAGGTGGTGACGCA 2043037 28 100.0 32 ............................ GTGCGCGCAGCCGGCCCGCAGACCCCAGAGAT 2042977 28 100.0 32 ............................ ATCGAGCACGGCGCCGAGGGCCTCGGGCACTG 2042917 28 100.0 32 ............................ GGGAACATCTTGCGGATCGCGTCGAGCTGATC 2042857 28 100.0 32 ............................ TTGTATTCCCAGGCTTTGACCGCTGCGTCCGC 2042797 28 100.0 32 ............................ TCTTGGTGGAGGTTTGCGGTACTGAAGGCACT 2042737 28 100.0 32 ............................ AGATCGTGCGGCTGATGGCCGAGAAGCGGTAT 2042677 28 100.0 32 ............................ AGCTCGATCAGCGCGGCGATCTCGCGCGCACC 2042617 28 100.0 32 ............................ TCCCATTCGCCGTTCCGCTGCTTGCAGCAGAT 2042557 28 100.0 32 ............................ TGCTGCTGGACCGCGATGTGCTGTCCATGTGC 2042497 28 100.0 32 ............................ GCAGGTCTGGCCGCACATCGCCGGGATCGCTG 2042437 28 100.0 32 ............................ AGGGGGACCATTCCGTTTTCTTCGATATTGTG 2042377 28 100.0 32 ............................ CGGTGCATCGCAGTGCAGGTGGCTGGGCTGCT 2042317 28 100.0 32 ............................ TGCACCTCCTCGGCGACGGCCAGACCCTTGAG 2042257 28 100.0 32 ............................ TCGCGTCCTGGATCGTGAGCTGATCGCCGATC 2042197 28 100.0 32 ............................ ACAACCACCCCCAATCCGGTGGAGTCACGTCA 2042137 28 100.0 32 ............................ GCCCGAAGGGCTGCGGCCCGTAGGGCTGCCGG 2042077 28 100.0 32 ............................ TGGTCTGTCGAGAGTCCGGCGCGGCGGGCGGC 2042017 28 100.0 32 ............................ AAGCGCGCCTAGGGTCTGCAGCCCGAACCGCC 2041957 28 100.0 32 ............................ TTCCAGGACTCAAGGGGTGGGTCCTCACCCGT 2041897 28 100.0 32 ............................ TGCTCCACCCATGCCCCAGGCGGCGGGTTGGC 2041837 28 100.0 32 ............................ ACAGCCGCTCTGCTGGCGCAGTGTGCATGTCC 2041777 28 100.0 42 ............................ GCCTGCAAGCCGCAGCGAGGGGACGCGGGCTCGTGAACTGCC 2041707 28 78.6 32 .G.TCT..A.A................. AGATCACCGAGGTACTGCAGCCCGAGGTCGCC 2041647 28 100.0 32 ............................ AGGACGGGGGCGGCAATGCGGGTTGACGAGGG 2041587 28 100.0 32 ............................ ACCGACCCTGCGATGCGGTACGCCCCACCCCA 2041527 28 96.4 32 ..............G............. ATGTCGATCGTCGTCTGGTGGTGCGCATTGCG 2041467 28 100.0 32 ............................ ATGTCGTCGGTCGGCGCCGGAGTGCACGACAC 2041407 28 100.0 32 ............................ TGATCCGGGCGGCCGACATGCTCGATCTGCTG 2041347 28 100.0 32 ............................ TGCTGCATGACGCCGATAACGCCACCTCGGTC 2041287 28 100.0 32 ............................ GCCGGGGCGCACAGTTATTCAAACGAGTCCAA 2041227 28 100.0 32 ............................ GCTTGTGTGCACATGGCCCGGCCCTCATTGGT 2041167 28 100.0 32 ............................ TCACCGGGGACGACCTCAATCGCGTACTCGGA 2041107 28 100.0 32 ............................ TCCTGCTGTTGATCGGCCTGGCCGGCGGGATC 2041047 28 100.0 32 ............................ TCACAGCGATCCAATGCCAGCGCCGCAAACCT 2040987 28 100.0 32 ............................ AGCCCGGGCGCGGCCCTCCTGCAGCTGGAGGT 2040927 28 100.0 32 ............................ GATCAAGATGAAGCGCGCGACGCTATCTATGA 2040867 28 100.0 32 ............................ GCATTGTGCCCGGATCGGTCCTGATCGTCGAA 2040807 28 100.0 32 ............................ GACCGGCACCCGCACCGTGCGCCCCTCGTCGT 2040747 28 100.0 32 ............................ ATCAGATCGCGATGTCCTGAGTGCGGATGCCG 2040687 28 100.0 32 ............................ AGACGGACCCAATCCGGTCGGCCGAGGTGGCT 2040627 28 100.0 33 ............................ CGTGATCTTCGGGACCGTGTGGATCACTGGCCC 2040566 28 100.0 32 ............................ GCAGTGGCCGAGCGCGAGGCGGACGACGTGGC 2040506 28 100.0 32 ............................ GAGCCGGGGACGCCGGCCACATCGTCGCAGAT 2040446 28 100.0 32 ............................ AGGCCGAGATCAGCGCGGATCTGCACCGCCTG 2040386 28 100.0 32 ............................ TGGAGGTGACGCCAGCCCCGGGCGCGGCCCTT 2040326 28 100.0 32 ............................ ATGGACGCCGCCAGCATCCCCAGCCGCAACGG 2040266 28 96.4 32 ....................T....... CCCTCACCCGTGCATCATATTTGCCACGCGGG 2040206 28 100.0 32 ............................ AGGCAGACACCCACGGGAGACAGCACCATGAC 2040146 28 100.0 32 ............................ AGCAGCTCGTGGCTCTGGCCGATGACCACATG 2040086 28 100.0 43 ............................ TCGATGTCCGGAATGATCCGGTCCAGCAGCTTGTGAACTGCCT 2040015 28 100.0 32 ............................ GTGAGATTGGTGGGCGTGGATTGAAACTACGT 2039955 28 85.7 0 .........T.....A......TG.... | ========== ====== ====== ====== ============================ =========================================== ================== 63 28 99.3 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCAATGCGATTGGCGACGCGCCGATGCTGCCCGAGCTGCTGGCGCAGATCGCGCCGGACGAGGCCGTTGCCAGCGTCACCGCAGACGGCGCCTACGACACGAGGGCGTGCCGGGATGCGATCGCGCAGCGCGGCGCGGTGGCAGTGATCGCACCGCGCAAGAACGCTCGCCTGTGGCGCCGCTCCAGTCCGGGATCCGAGTCCCGAAACGAGGCCGTCCGGGCATGCCAGCGCCTGGGGCATGGCATTTGGAAGACGTGGAGCGGCTATCACCGGCGCAGCTTGGTGGAGACCAAGATGCACTGCCTGAAGCGGTTGGGCGAGCGGGTCACGGCCCGCACGTTCGAGCGTCAGGTGGTCGAGCTGCATGTGCGCGTGGCCGTGCTCAACCGCTTCAGTCAGATCGGCCGGCCGCAGACCGTGCCGGTGGGTGCCGTGGCATGAGTCCGTCCGGGGTTGGGGTCAGGGCGTCTGCTCGTGGATTTGTGCAACAGAGCCGTC # Right flank : ATAAAGCGGGGTGGCAGGGATTGAAATTTGGATGTCTGCGTGGGCTCTCGCCTGCGCGAGGGTGACGGCGCTGTCAGCGTGACTGCGTCGCCACCTCACGTCACATCACCTCACCAGCGGCCTGACCGTGCTGAACCCCCCATCCACCGCGATCACCTGGCCGGTCAGCCGCGAGGCCTGGTCGCTCAGCAGCCAGGCGGCGGTGGCGGCCACGGTGTCGGCGCCCTGCACGCCGCCGAGCGGGTACTGGCGCGCGGCGGCCTCGCGCATCGCCTCGACCTTGAGCATCGGGGCGGTCATCGGCGTCTCGGTCATGCCGGGCGCGACCACGTTGATGCGCAGGCCGGCCGGCGCGTAGGTGGCCGCCGCGCTGCGCGCCAGGGCCTCGACGCCGCCCTTGGCCGCGGCGATCGCCTCATGGTTGGCCACGCCGATGCGCGCCACCACCGAACTGCACAGCACCGCCGCGCCGGGCTGGCCGGCCGCGCGCAGCGCCTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2045118-2044789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035708.1 Sphaerotilus natans subsp. sulfidivorans strain D-507 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2045117 28 100.0 32 ............................ AGTACAAGAAGGAGCTCGAGGTCTTCCAGGAT 2045057 28 100.0 32 ............................ AGCAGCGCCTGCCAGCGAGGCATCGTCTCGGC 2044997 28 100.0 32 ............................ ATTCGGCGGCCCCGGGGGCGCGCAGCACATGC 2044937 28 100.0 33 ............................ CAGACGATCAGGATTGACGTGCGGCACGGTTGC 2044876 28 100.0 32 ............................ TGACGCCGGACGGCAAGAAAGCCCAAGTCAAG 2044816 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCGGCGCTGATGGGCACGGCGTGGCTGCGCGGCATGCGCGATCACCTGACGGTCGGCGAAATCGGTGCGGTGCCGACGCAGACGCGGCATTGCTGCGTGTCGCGGCGGCAGTCCCACAGCAGCCCTGAGCGGATGCGCCGCCGCCTGATGCGTCGCCAGCAGATCGACGAGGCCACGGCCCGCGAGCGCATTCCCGACCAGGCCGCCACCTTCCTGAGGCTGCCGAGCCTGCAGGTGCGCAGCAGCAGCACCGGCCAGCATTTCCGGCTGTTCATCCAGCACGGCCCGCTGCAGGACGCCCCGGTGCCCGGCGCCTTCAACGCCTACGGCCTCAGCACCAGCGCCACCGTGCCCTGGTTCTGACGACGACCCTTTTTTGGGGCGGCAGCCTCCGCTCCTTAAAAATCAAGCACTTAGCGCAGGCCCCCGAAAGAGGGTCTCGCGCCAGACTCTGGCAGAATGTTCAAGCGCGACAAGCACTTGGGCGTCTGCCAGCTCTA # Right flank : GGCGCCAGTAGCAGCGGGGCTTGTCCCAGGTCGTGAACGGCTCTGTTGCACAAAGCGAGCGTCCGAGCGCTCGTAGACTGACGCGGTGAGCGAAGCCAAGAAGAAGCGGACGAAGTACCGCACGACGAACTGGAAGGCCTACAACGCGGCGCTGAAGGCGCGGGGAGCGTTGACGATGTGGCTGGACCGGGACATGCAGTGGCTGGCGGCGCCGTCGGGCAAGCGCGGGCGCAGGCAGACCTTCTCGGACGCGGCGATCCAGTTCTGCCTGAGCATCAAGTGCTTGTTCGGGCAGGCGTTGCGTCAGACGCTGGGGCTGGTGGAGAGCCTGCTGCGGCTGGCGGGGCTGGACTGGCCGGTGCCGGACTACAGCACGGTGTGCCGACGTCAGAAGACGCTGCAGGCCCAGATCACCTACCGTCCCAGCGCCGAGCCCCTGCAACTGCTGGTCGACAGCACGGGGGTCAAGTTCCTCGGCGAGGGTGAGTGGAAGCGCAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //