Array 1 44382-42958 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPH01000001.1 Saccharopolyspora hirsuta strain VKM Ac-666 n1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 44381 37 100.0 37 ..................................... TTGCTCGTCCAGTTCTAGTACCTCTGGAGGGAGCGGG 44307 37 100.0 38 ..................................... GATGCCCAAGCCCTCAACCTCGGCAAGCCCGCCAGCAG 44232 37 100.0 38 ..................................... ATCCGGCCGACCAGGGCGCGCAGCTCGCGCAGCAGCGT 44157 37 100.0 34 ..................................... GATTCCCCTTGGGTGGTGGTTGAGGGCGGCACCC 44086 37 100.0 35 ..................................... GTAGACGAGTTCGGCGTTGTCACGTTCTGGAGCCG 44014 37 100.0 37 ..................................... CGGATGTGCGGCCCGCACGAGGTCGGCCGCGGCTGCG 43940 37 100.0 34 ..................................... CCGGCCCCGCCACCACCAACCGACGTAGCCAGGG 43869 37 100.0 35 ..................................... GAGGTGATGATGGTCGGGAGCATCACGTTGTACCG 43797 37 100.0 37 ..................................... GCGGCCTACCGCGACCCGCGGGCACCGAACAACATCC 43723 37 100.0 37 ..................................... AGCGGGTAGCGGCTGTACCAAAGCGGCGGCAGCCCGG 43649 37 97.3 37 ...........................C......... TGCAACACCTGCGAGGAATGCGCCGAGCTGGCGTGGT 43575 37 100.0 37 ..................................... TACGAAGCCGCTGATCGGGCCACCCGGCCGCCGTCGG 43501 37 100.0 38 ..................................... GGCAACGTCGACACCCGCGATGTCTACCTCGCGACCGT 43426 37 97.3 37 ...........................C......... TCGGCGCGCTTCGGAGCGAATTTCCGCAGGACAGCGG 43352 37 97.3 35 ......................A.............. CGCGTCGATGCGGTGCTTCACGGTGACCGTGATGG 43280 37 94.6 36 ...C..........T...................... ACCGGCCGCGAGGTCTGGCTCTACCGATGGGCCTAC 43207 36 94.6 39 ..............T....-................. GAGCACCAGGACGTCGAGCTCCACCTGGCCGTTCTCGAC 43132 37 97.3 37 .........................A........... CCCCAGCCGGCCATGTCGCCGAGCTCAGTCACCGCGT T,G [43120,43122] 43056 37 97.3 24 ......................T.............. CACAGGCAACCGGTGGGCAGCGAA C [43043] Deletion [42996] 42994 37 81.1 0 ....TT.A........A....G........A.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 97.8 36 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : CCCACCGTGATGCCCCAAGATCGCCAAGGCCGCAGGCCCCGCCACATCCACCAGCCAGCGAGCACCGAAATCCTTATGCGGAAACCCGACTGCCTCATCGGTGCCCTCAACCTCCAACAGCCGCCGCTGCCAGCACCCGCGCGCCTTACCCGCATCATGAAACAGCCCCAACGCGAACCCGAGCTCGCCGGCGCCGAACTCGCCAGCGAACCGCCGCGCGAGCGCCCCAGTTTCCCGAGCGTGATCGGACAGCAAGTGCCGACGCAACCGGCTATTGACGCTGTGAGCCCACACCACAACCTCCACCGAACGCCTCGTCCAGGAGAACGCCGCGCACCGTACCCGCCCCCACCGACAACCCCGCGGAAACCAACAACCACCCTTCGGAACCCCAAGCGTCCACCGACACGCCACGACATCCCGAACTACCCCACGGGCAAGTCGATCACCAAACCATTAAGATCAACCCCAGAAGAAAGGAAAAGTCCTGCTCAAGCAGG # Right flank : TAGGCGACCACCAACGTCGGCACCGGATCGTGCTGGGTAGCGCCAATCGGCGAGGTCCACTAGTGCTCACCAACGGGCGTGTGGCCAGATCGGATCCGTTTCACCAACGCGCGTGCACGCGCAGAACCCACACCTAGTTCCCGGCGCAACGTCTCCGCCGAGATCGGCCGATGGTGCCGCCGCCAATGTTCTACGTCGAGATCGACGGCGCAAGACACGAGCTCCTCGACTCCGCGCGTGCCCGCATCGTCATCATCCAGCTGCTGACCAGGGACGTTGTCCGAAACCGTGCACGACGCTGTCGATACAGCACCACCGTCACCGGCAAGGTCAACGGCTCTCTGTCCTTCAGCGTTGGACGGCGTCCCGGCTGCGGAAATCGCCTGCAGCAGCCCCGGCCCGACCTCCGCCCAGCCGAACAGCAGCAACGGCCCCACCGCATCGAAGGCCGCCTTGCCGAACTCGCCGGCACAGATCGGCTCGGCCACGTTCAACGCCAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-19.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 52737-53618 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWPH01000001.1 Saccharopolyspora hirsuta strain VKM Ac-666 n1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================== ================== 52737 37 97.3 37 .........................A........... GATATCGACCACAAGCGTGCCGTTCGGCATATCAGCT 52811 37 100.0 37 ..................................... CCCTGCCAGGACGTCAGCAGCGCCGGACGCCGCGCCG 52885 37 100.0 35 ..................................... GATGACGCGATCTCGAAGGGTCCCCGGCATCCGCT 52957 37 100.0 35 ..................................... CAGGTCGCCAGCGCAGGGTCCTGAGACGACAAGTC 53029 37 100.0 37 ..................................... AACAGGGAGGAGCTGCAGCGGCTGCGGGAGGCGTTCC 53103 37 100.0 37 ..................................... GACCTCTCCGGCGCGGAGGCGGTGCTGGAGATCGACG 53177 37 100.0 37 ..................................... TTAGGGGGACTGCATGAGTCCAGACACGCTAGGGCAG 53251 37 100.0 37 ..................................... CGGCGGCACCCTCGGTGCGACTGCAGGCACATCCCGG 53325 37 100.0 38 ..................................... CGGATCGGTTGAGTGCGCAGTGGCATCCACGAGGGCGC 53400 37 100.0 34 ..................................... GCCGCCGCAGCCCCGGAGCGGGCCAACCCCAGCG 53471 37 94.6 74 ...........................A........T ATCCCCTATGTTGAGTCCGAGGTGTCCGGGGTCGTGTGGCGCCAGCCCCAGCGGGCTGCTGCCGCCGGCCCTGA 53582 37 81.1 0 TCCT.........T...C.A................. | ========== ====== ====== ====== ===================================== ========================================================================== ================== 12 37 97.7 40 GTGGCGCCAGCCCCAGCGGGCTGGCGAGGATCGCAAC # Left flank : TCCTGCCCCTCACTCAGGCTCGCCTATTATCCCGCCACCTGCGAGGCGACCGTCCCCTCTACACCCCATGGATCGCCAGCTGATATGGAACTCCTCGTCACCTACGACGTCGACACCACAACACCAGCTGGGCGTCGAAGACTCCGCCAGGTAGCCAAAATCTGCGAATCCTACGGAATCCGTGTGCAGAAATCCGTCTTCGAAATCGTCTGCACCGACGCAGACTGGATCACCATGCGCCACCGCCTCCTCGACATCATCTCCACCGAGCACGACAGCATCCGCATCTACACCCTTCACCGCGGAACACTCGACACCGCACAACACCTCGGGCACTCACCCCCAGCACCCCACCACGACCCACTCATCTACTGAACCCCACTTCGGAACCCCAAGCGTCCCGCGACACCCCAGCACCTTCCGAAGTGAATCCCGCGCAAGTCGATAACAAAACCGTCACGACCACCAACATCAACCACGTAAACCCCTGCTTACGCAAG # Right flank : CTTCCCCTGGCCCGTGATGCCTCGCTAGCGAGGTTCTGAGGTTCTCGCCGTCGTCGCGCCACGTCACGGAGGAGGGCAGGTCGGCGCTGGTGAGGAACTACCGCTGCCGCTACATGCAGGAGTACGCGCTGGCCAACAAGCTGGACCACCCACGCAATGTCTACTTCCGCGAGATCGACATCCTGCCCGAACTTGATGGGTGGCTGGCCCGCTTGTTCACCGAGGAGCAGATCGAGGACACCGTCGCCCGCCTGGTGGCAGCGGCAGAACAGGACACCGGTGGGGACACCGAAGCGCTTCGATCCGCTCGAAGGACCGTCAAGGACTGCGAGCGCAAGCTCGATCAATACAGGCAAGCTCTCGACCAGGGAAATGACGCTGGTGTCATCGCCGGCTGGATCGCAGAGGCCGAAGCCCAGAAGCTGAAGGCACAGGCCGCGCTACGCGGCAACAGATCCCGGCCTGCGAAGATCGCACCGACGTCGATCCAGCAGATGCTC # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCCAGCGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.80,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //