Array 1 18090-19513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNIV010000001.1 Clostridium jeddahense strain 1001270B_150601_B10 NODE_1_length_477317_cov_48.2262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 18090 31 100.0 37 ............................... GCATATCAAAAAACAGTGTCAGAGCAGGGTGCGGGCG 18158 31 100.0 35 ............................... CCGCCGACCGTGATACTTTTGGAAAATGGGCAGAG 18224 31 100.0 36 ............................... ATGATTATTCCTCCTGTTCCGGCTTTCGAGCGTAGG 18291 31 100.0 34 ............................... AGCACCTTTTTGATGTTCTGGATTTCAGGATCGG 18356 31 100.0 34 ............................... TGGGCAGGCCTATCAGCGCAAGGTGCGCCCGGCG 18421 31 100.0 35 ............................... TCCAATGTAACCATTGGGGATTTTTCTTTTAGCCG 18487 31 100.0 34 ............................... TGAGCAAGTGTTTCTCGCCGTTCCGTTGGCATCG 18552 31 100.0 35 ............................... TATCAGTAATGGCGTGTATGATGGCGAGTTAGCTG 18618 31 100.0 36 ............................... TATAAGTAAATAGTAACACATTATAGAGTAACATTG 18685 31 100.0 36 ............................... CCGTCCCATCAGAAACGATTCCCGGTACTTTCCAAG 18752 31 100.0 35 ............................... TGCAAAATTCTCTCACTGAAGATCAATACAAAGCG 18818 31 100.0 35 ............................... CACTGATCGGATAAACCGGCATTCTGTGTAAAAGG 18884 31 100.0 35 ............................... CGCTCACGAAAGCCTTTGCGGCATCCGCAGCGGCG 18950 31 100.0 36 ............................... GACAAATTACAGCTCACCGCGCCAACGGTGATCTGG 19017 31 100.0 36 ............................... CACGGCAGAGCCGTCAGCGAGGCTGATTTTCCCGGG 19084 31 100.0 34 ............................... CGGTTTTACCTATATTGGAACTACAACCATAATG 19149 31 100.0 35 ............................... ATTCCAGGGAAAGTTGATAATCTAAGAGTGCATGG 19215 31 100.0 35 ............................... TACTCGAACCTTTTCATATCCGAGAGCTTTTACGG 19281 31 96.8 37 ............T.................. ACGGATTTCGTGGGCAATATTCACACCGTTCGCGCCG 19349 30 93.5 36 ............-T................. CTGCATCTCTGCAATCAGCATAGGGCTGGCGGATTG 19415 31 100.0 35 ............................... GGTAAGGACAAGACTCCGCGCGAGATGAAAGACCG A [19432] 19482 31 87.1 0 .....T...G.A....A.............. | A [19498] ========== ====== ====== ====== =============================== ===================================== ================== 22 31 99.0 35 TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Left flank : ACCGGTTTTAATGATACTTATCCCTTTTTCCTTTCATTTTATAAAAGCAGGGTACCGTTATGCGGTACCCTGCTTCGCTTTGTGAAAGGTGATTGGAACATGTGGAGCAAATTGCTGCGGATATCATAACAAAAAAATTTATATTCTGATCGAAAAGAATACAATACCTGTTGAGCTTTGTTGGTTTGCGGAGTAAAATAAAAATAATTAAAAATTCTGGAATCTGGTGGGGCAGTGGGCTTCGGATTCAATTTTGAAAAATTATCTGTCTAAAATAGAACACATGGGTGCAAAAATCAGCTGTTCTGTGGAACGGTTTTGATTATGCAGTGCGAACCATCAGCGAACAGAAAACAGCAGGGGTATTCGCGCTGATTTTTGGTAATTTAATTATTTTTCAGAATAATCATTGCATGATTAGCAGATGCGAAATTGATGTCTGAATAAAAGCTTGTGTAAAGACTCTTATTCTATCCGTTCGGCTTTGTCTGTTTTTGCAG # Right flank : TTACATGCAATCTTGGTTCGTGTAGTAGCAGAATTGCATCCTTCCATAAAATTTTTGGGCAATCGGCCGCGAAAATCCGGTATGGGATTCTCTGGCGGCTGATTGTCCCACCTTGTCCTTTCTACATATAATGAAGCACCTATCAAAAAGGAGGGTTTGATATGTGGGCTTGGTATCATTGTCATTGGTGGTTCTGCTATAACGGCCACTGTATCCCGTGGTATGATTAAGAAACGAGTGCGGCAATCGAGTCTGATTTAAAGATCGATTGTGTGCAGGACTGTATGAACACATGGATTTTCCATACACTATCCCCGAGGTGATTTTGTATGGATTATTCCGACTTTTCTTTTCCTCAGGCTCTGTCTGAAGATCGCAAGCTGAAAGAGTTTTTTGATTCTCTTCCGGAGCAGGATCAGCTGCGGCTGATGCAGGGCTGCAGCTCCTACGGCGAATTTTACGACAGGGTCGTACAGGCAATCCCAAAATGCTGAAAAAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 80254-78141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNIV010000007.1 Clostridium jeddahense strain 1001270B_150601_B10 NODE_7_length_199967_cov_50.8958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 80253 33 100.0 34 ................................. GCGGAATGTTATTGCCAATTATCCGGTTAACCGG 80186 33 100.0 34 ................................. ACTTCCCATTGTCGGAAGCCGAGAGCATCCGGAG 80119 33 100.0 33 ................................. GTGGTGATGATCTGCGGAATAGATAAATCTGGA 80053 33 100.0 34 ................................. GAGCATGCTTTTTATGGGTCGTATTCCATCTACT 79986 33 100.0 33 ................................. AATCCTGCCAGTGATAAATTTTACGCCGATGGT 79920 33 100.0 33 ................................. GCCCTCTTTGGCGAGTTCGTTTATAGTTTCGAT 79854 33 100.0 34 ................................. CGGTACCGGTGGTTCCGGGAAGTCTCTCGATGCG 79787 33 100.0 35 ................................. AACCGATAAAAAGGGGTTTGGAATTGGTAAAGCTG 79719 33 100.0 33 ................................. GCTGTCATGCTTTAGCAGCTCCTGCACACGTCG 79653 33 100.0 34 ................................. CAGGCATATGACGCAAACGGCAAAATGAAACCCC 79586 33 100.0 35 ................................. TGAATTATCACCCGGAGCACAGAAATTTATATTAA 79518 33 100.0 36 ................................. ATACGTCGTAAACAAGGTTGCACAGGCTATTTCGGA 79449 33 100.0 34 ................................. CCCAGCAGATCACAAGCAACGTCGATACGACTGA 79382 33 100.0 35 ................................. AAAAGCGATACTCCTGTTATCAGGCTCCGTCGGCA 79314 33 100.0 34 ................................. CACACGAATTTGTTTTGACATAACTGTGCCTCCT 79247 33 100.0 33 ................................. ATCCATTATCATATGCACACAATCTAATGTCAA 79181 33 100.0 33 ................................. CGCAGCCGCAGGTTGTGGTACGGTTTGAATTTA 79115 33 100.0 34 ................................. TGTAAATTTCGGGTACAGATCGGTGTACATAGGC 79048 33 100.0 36 ................................. TTGTGCCGCAACTTTTCCGGGTAACTGCGCAAACCA 78979 33 100.0 35 ................................. GGACGCAATATAAAACGCATAATCACCATAGCTAA 78911 33 100.0 33 ................................. CGGGCCGTGTATAGTTAATTTGCTCCCACATAT 78845 33 100.0 35 ................................. CATAGTCGCAATGATAAAACTGACCGGAACAATCC 78777 33 100.0 33 ................................. ATCATTGACAAAGAAAGATAATTATCCGAAGAT 78711 33 100.0 35 ................................. TTATCTGAATTTGTCTCAAACCTGTGGCGGCAACT 78643 33 100.0 33 ................................. CTACCGTAGCGAGCGGATTCACAAGCAAACGAA 78577 33 100.0 33 ................................. GAGCGAGGCTCCTGACATTGAGTGCCAGGCACT 78511 33 100.0 35 ................................. AGCTGGCCCGCGTGGCAGGCAGAAAAGCTGAAAAA 78443 33 100.0 34 ................................. CGAGTGGCGGCAAGCTTGAATTTAATTGCGTAAT 78376 33 100.0 34 ................................. AAACCGGATATGGAGAAGCACCGGGGCAATCTCC 78309 33 100.0 34 ................................. AACTGCCGTCTTGTCAAGGCCCCGCAGCGCGGGG 78242 33 100.0 36 ................................. AGCGTGCCATCGGAGTTGACGTTGCGGGCGTTGTTG 78173 33 75.8 0 .C..C.....G.AT.....G...A....A.... | ========== ====== ====== ====== ================================= ==================================== ================== 32 33 99.2 34 GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Left flank : TATCCGCGGCGATATCGATGAGTACCCACCGTTTGTCTGGAGGTAGACGATGCTTGTCCTGATTACCTACGATGTGAATACCGAGGATGCAAAAGGCAGCAAGCGGCTTCGCAAGGTTGCAAAGATTTGCGTGAATTACGGGCAGCGCGTGCAAAATTCTGTGTTCGAATGCCTTCTGTCCCCTGCGGAATTATGTATTGTGAAAAGCCAACTGCTTACTGTTATGGACGAAAAGAAAGACAGCCTGCGTATTTATCATCTGGGAAACAATTATAAAAACCGTATTGAACATTACGGAGCGAAACAAACATACAACCCGGAAGATCTGATGACATTTTAACGCGAATCGCAAGCGTACATCAAATCCGCGGGGGATTCGCGCATGAAATTGGATCAATTTATAGTGAGAAGCTTTGCTAATCTGCGATTTATTTTCTTTTTGATGTAAATGATTACTAAGCTTTAATCAAGATCATTTCGCTCAATTTGTTTGTTTTGCA # Right flank : TTGACCAGTCTGACAAATGGTACTTTGTATCTTTTCCCGCCTGCATGTCGAGTTTTACACTGTGCTTCCTCTGGCCGATTCAAGTAAATATTTTTAAAGTCGATGGAACGCCCGGGTTTACTCTGCGTTTACATTGTTGGTATACTATAAACAATAGAAAGCCGGAGAGGAGGCGCATTCATGGCCGCCATTTTAGTCATTGATGATGATCCATATATACGGGAGCTCGTGAGCACCTTACTGCATAATGAAGGCTTCTCGGTACAGGAAGCCCGGAATGGGCGGGAAGCGCTGCAAAAGCTGAGTGAAACGAAAATCGACCTCTGTGTGCTGGATTTGATGATGCCCGAAATAGACGGTTTCGAGTTTTGCGGTTATGCGCGCCGGTACTATGAGGATTTGCCGATCCTGATGCTGACGGCGAAGGGCGAGATCAGCCAGAAGGTGAAAGGGTTCGAGCTTGGAACAGACGATTACCTGACAAAACCGTTTGAAGGCGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //