Array 1 47211-45879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUE010000014.1 Listeria seeligeri strain FSL L7-1072 NODE_14_length_92399_cov_15.351011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 47210 29 100.0 36 ............................. AAAATCAAAAGCTAAAGTTATTCTCGCAAGTGCTGC 47145 29 100.0 37 ............................. AAGAATATGTGGGACTCCGTGAAGCAGGAGCGAGTTC 47079 29 100.0 36 ............................. ACAGTAGTTGTGAATGACCAGTTACTGAAATCACGA 47014 29 100.0 35 ............................. GAAGTTATGTGACCTGATTGAGGAATACTACAACG 46950 29 100.0 36 ............................. AACACAAGGTGACAATTTACAAACACAATTCGACAG 46885 29 100.0 36 ............................. ATTCTTCAATCGGAACTCCAAAATATTCGAGTACAA 46820 29 100.0 37 ............................. TGTTGATATTAATACCTAATCCTGACCAGTTCATGAC 46754 29 100.0 38 ............................. TTTTATGAAAAGTTGATTCAAGATACTTTTTCGAATGC 46687 29 100.0 36 ............................. CTAATCAAGCTAATCGAGACTCTCAAAAAGAGGTCA 46622 29 100.0 35 ............................. AAGTCCGAATCAGTGATTTGGTCTTCATACTGCCT 46558 29 100.0 37 ............................. CTCGTTAGTGACTACTTTCTCTCCATTTTTTGCGATA 46492 29 100.0 38 ............................. TAACTCCGTTGCCTTGCTGCTTAGATAATTCCATTCCT 46425 29 100.0 36 ............................. TACACCACCTTTGAAGTGGAAAGTTCCAAGGAAGAC 46360 29 100.0 35 ............................. AATAACTTCTACTCTGTCACCTTTTTTAAATTTCA 46296 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 46231 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 46167 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 46102 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 46037 29 96.6 36 ............................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 45972 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 45907 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGGGAGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATCGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 56697-55823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUE010000014.1 Listeria seeligeri strain FSL L7-1072 NODE_14_length_92399_cov_15.351011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 56696 29 100.0 37 ............................. CTCCTAACCAATCCAGATTTAATATAGTGCTGATCAC 56630 29 100.0 37 ............................. CTTGGTCGAGGAGATTCAAAAGGATGTTTTTAGAAGT 56564 29 100.0 34 ............................. AAGGCTTTTAGTATCTTGTCAATAAATCCTGTTA 56501 29 100.0 35 ............................. AGGGTTTCAAGGAAGAACACGGAGAAAATATCAAG 56437 29 100.0 35 ............................. AAAAGAAAACAGGCATGGGTTAATAAAAAATATGG 56373 29 100.0 35 ............................. AAGCCAAACAATGCCAGCAACTAACAAGGTAATTC 56309 29 100.0 41 ............................. TTTTTTTAGCAGCATTATCAACATCAGTATAAGAGTCTTCT 56239 29 100.0 35 ............................. CCATATCCTATTGAGACTAGGAGCAAACGCCATTA 56175 29 96.6 35 .......................A..... ACAAGTGGCTTAATATAATACGTTGGTGCTATAGG 56111 29 100.0 36 ............................. TAATCAGAAATTTTATAAAAATTATCGAAAGTTTTA 56046 29 100.0 36 ............................. TCAGCAACCAATCCAAAATGGATTGATAGCATCAGT 55981 29 100.0 37 ............................. GAATTAGTAACACAATTAGATCCAACTTCTATTACCC 55915 29 100.0 34 ............................. CAACAGCAGATGACTGAGTAATCTTTTCGTTCTC 55852 29 86.2 0 ........C....C..A...........G | T [55825] ========== ====== ====== ====== ============================= ========================================= ================== 14 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTCCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 63422-62943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUE010000014.1 Listeria seeligeri strain FSL L7-1072 NODE_14_length_92399_cov_15.351011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 63421 29 100.0 35 ............................. ACTAAAAAAGAACATATGTACGAAAGGAGCATGAG 63357 29 100.0 34 ............................. AACAGTGACACCCCAATCATCAGCAAGAGCTTTC 63294 29 100.0 37 ............................. AACATTACCGGTTTTTGAACCGCAACGATGAGTTGTT 63228 29 96.6 34 .....................G....... TTAATTATTGAAGCTGGAATCGAACTCCTTTTCG 63165 29 100.0 37 ............................. CAAGTTAGTCGGCTCATTTTAAAATGGTTAGCGAAAC 63099 29 100.0 34 ............................. CATTTCATCCAATTGATTCAATAATAAATTATTC 63036 29 96.6 36 ............................A ACATCGAATTAGATGGATTTATAGTGACCCCTTTTA 62971 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GAGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGATTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //