Array 1 1094497-1098436 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXD01000001.1 Clostridium perfringens strain NCTC10614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1094497 29 100.0 36 ............................. TAATTATAAGATTTACAAGACCTTTGAAGTTCAACA 1094562 29 100.0 37 ............................. AACCAACAAGACCCCACAAAGGAGCTAACATTAATTC 1094628 29 100.0 36 ............................. TTAATTAAATCAGCTCTATATTTAAAAGCATTGTCA 1094693 29 100.0 36 ............................. AGATAACACTATAACCTAACTTTCTATGCTGAGAAA 1094758 29 100.0 37 ............................. TTAGTAACTGCACCTTCATGATTTTGCAATTCAAGAG 1094824 29 100.0 36 ............................. GCTTAAAATGTTAGATAATAATACTACTAGTTCGGT 1094889 29 100.0 35 ............................. TTACCATTAAATTTACCGTTTAACTCTCCCTCCAA 1094953 29 100.0 37 ............................. TTATAGAAAAAGTATAAACAAATTTAGGCTCTATAGA 1095019 29 100.0 36 ............................. TTCATTATAAAGATAGAAGAAAACTATCTATTTATT 1095084 29 100.0 36 ............................. ACCATAATTATAAGACTTACAAGACCTCTCTAACTC 1095149 29 100.0 37 ............................. TTGGTAATATCCCACGGAATACAAAATGGAAAAGCTT 1095215 29 100.0 37 ............................. TTTAATTGTAGATGCAATCATATCATTTTTATCCATC 1095281 29 100.0 36 ............................. TACTATCATGAAGGTAGAAAAGTTCTTGATGAACAA 1095346 29 100.0 37 ............................. AAGTACAAAAACATCTTAGATTATAAGCTAGGGGACA 1095412 29 100.0 36 ............................. ATATAATAAAGGCAAGTAAATAAAAGATACTTCTTT 1095477 29 100.0 36 ............................. TGCATGCTAGGGTTACTATGGATTATATTTATTTAA 1095542 29 100.0 36 ............................. GTTTATTCAATTTAACTTTACTATTATAACTACCTA 1095607 29 100.0 36 ............................. TTATGATTCTGCAATTCGAGAGCTTTTTGAGTACAA 1095672 29 100.0 35 ............................. TTGAATTTACCATCAAGTTCTCCTTCTAAAGCCTT 1095736 29 100.0 36 ............................. TTTTCTTAACATCAAATACCTTATTTTCATCACCTT 1095801 29 100.0 36 ............................. TTTAAAGGCTACGCTTCGCTATGTCTGCGACGCCAC 1095866 29 100.0 36 ............................. CCATTACAACCAATAACAGTCACAACACAATAAGTA 1095931 29 100.0 37 ............................. ATACAAACTATAAAAAAATAGCTAAGATTATTATTAT 1095997 29 100.0 36 ............................. AGCAAGTAAACTTGCTATATGATGTTTTTTATCTTC 1096062 29 100.0 36 ............................. TATCATACATAATATTACCGTCATTATCCAAGTTAC 1096127 29 100.0 36 ............................. CAGAAAAAATTAAAGAGCATACGAGACCAATAAAAA 1096192 29 100.0 36 ............................. TTAAAAAAGAAATTAGCTATATTCTCCGCAGTCTTA 1096257 29 100.0 37 ............................. GTTCACGATTATCAATGACAACTGTTAAGTTACTTAA 1096323 29 100.0 36 ............................. GAACTTATAAAGAGTGGTAAGAGTGTCGGAGATATA 1096388 29 100.0 36 ............................. ACAAATTTCAATATCATTAAATGGTAAATCAGTTGA 1096453 29 100.0 36 ............................. ACAATATTCATCAACATTAACACTATTTTTCATACC 1096518 29 100.0 36 ............................. AACCTAAAAATAGGAGATACAGTATAAAGAGTAGAT 1096583 29 100.0 36 ............................. ATTTTGCGTTAAAAGTGTAAGAAGTTCTACAGGGAA 1096648 29 100.0 36 ............................. AATTACTATTAACAGTTTTAAGCTCATCAAGTTCTT 1096713 29 100.0 36 ............................. ACGCATAATGACACTATATACATAATACAAAGCAAC 1096778 29 100.0 35 ............................. TTTTCTATAAGCTGTACTTTTAGCTCCACCCATAA 1096842 29 100.0 36 ............................. TTGAAAATGTAATAACTCTTATTTTAAGAGAATATT 1096907 29 100.0 37 ............................. TTAATATTGGAGGAATTAATGAGATATAACTTTACGG 1096973 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1097038 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1097103 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1097167 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1097232 29 100.0 36 ............................. CTTTTTTTTAGCTCTGCAAGAAGTAAGCAGAACAAC 1097297 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1097362 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1097426 29 100.0 37 ............................. TTAAATTTTAGCCAATAGTAGTTAGAATCTTTATAAA 1097492 29 100.0 36 ............................. TTAATTTTGCCAGAGTAATTGATTTGATTTTTACAA 1097557 29 100.0 36 ............................. ATTTTATTTTACCTGCTAGCATATTCATTTTAGATG 1097622 29 100.0 36 ............................. AACGATAACGCAGATTACATGAGTGTTGTAATAAAT 1097687 29 100.0 37 ............................. AAAGTTTTTCTAGTAGCTTCTGCTACTCCTATATATT 1097753 29 100.0 36 ............................. ACTGTTGAATCAGGAATTTTAGACAATGCTTCTAAA 1097818 29 100.0 37 ............................. CTCATATCAGTTGGGTAGGATGGGAATCTATTACAAA 1097884 29 100.0 37 ............................. TCAGAATTTTTATTAATTTCACCTGAACTTTCTTCTA 1097950 29 100.0 37 ............................. GTTATTATTTCAACTTTTCTTTTTATCTCTTCATCCC 1098016 29 100.0 37 ............................. AGAAAGAAATCATTGACCCTATAGGGAAAAGCCAATT 1098082 29 100.0 35 ............................. TTATTCCCTAAAGCGTTCTTATTCCCTTTAGGAGC 1098146 29 100.0 35 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 1098210 29 100.0 37 ............................. TTTATAATGCTCTCGTTGATCATCTGTTAGTTCAAAC 1098276 29 100.0 36 ............................. TTTTGATTTAACTCTACAAGCTTTAAGCAACTCTCT 1098341 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1098407 29 86.2 0 .................GAA....C.... | T [1098434] ========== ====== ====== ====== ============================= ===================================== ================== 61 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //