Array 1 2-2071 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELD02000053.1 Paracoccus aeridis strain JC501 NODE_130_length_2025_cov_20.731852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2 31 100.0 35 ............................... GTGGTGCTGTTCTGGGTGCTGGTGATACACCAGCT 68 31 100.0 35 ............................... CACTCCAGCCGCTCGGCGTCTTCGAACGCGCGGGT 134 31 100.0 36 ............................... CCGTCTTGTGTGCGGCCATGGGCCACCTGTGAACGC 201 31 100.0 35 ............................... CGCAGCATCGGGACGTAGCAGTAGAAGCTCTGCCG 267 31 100.0 35 ............................... AACGGCGAGAAGAAGCGCGCGCGGAAGATCCTCAT 333 31 100.0 36 ............................... ATGGGACGGTGATGCCGTGCTTGGCCGCAAGGGCGC 400 31 100.0 34 ............................... TTGATCCGCGCGCGCGCTACCGTGCCTGCCGCCG 465 31 100.0 35 ............................... TCGATAATGCGGCACTTCGCGACTATGCCGCGAAG 531 31 100.0 34 ............................... CACTGCATCGACGCCGCCAGCCAGCGGGACGCCT 596 31 100.0 35 ............................... ATTCCGGCTGCCTCCCAAGTCGGGCCAAAGCACGC 662 31 100.0 34 ............................... CCCCAAGCCGCGCCGGTGACAGCGGCGGCAAACT 727 31 100.0 38 ............................... GAAATGACGGAATTCAAGTTCCACATCAAGATGCCCAT 796 31 100.0 34 ............................... ATGCGCGGAGCGGAAAAGGACGCCGCGCTGTGTC 861 31 100.0 35 ............................... CTCGCCGACATCCGCAAGCTGCGCGCGCCCTTCAC 927 31 100.0 35 ............................... ATTTCGACCGAAGCCAGCCCCTCAGCGCAGACCGG 993 31 100.0 34 ............................... AGGCGCAGGCCGGCGAATGTGTACTTGATGCGCC 1058 31 100.0 35 ............................... CCCCTGAACCAGTGGAGGCCACCATGGCAAACCAT 1124 31 100.0 36 ............................... AACGACGAGACGAAGCGCGAGATCAAGGCGACGACC 1191 31 100.0 35 ............................... CCCTGCCCTCAGCCGGCGTTCGGCACGCTCCAGCC 1257 31 100.0 32 ............................... ACGAGTCTCGCCGTGCTCGAACGGTGGTTCGA 1320 31 100.0 34 ............................... AGCTCTATCTCGCTGCCGAACGATCCCGCCTTTT 1385 31 100.0 35 ............................... CTTGCCAGCCCGACGAGCCTCGGGAACACCCTGCA 1451 31 100.0 35 ............................... ACGCGAAGCTGCACATCCTGGCAGGGCAGGGGGCC 1517 31 100.0 35 ............................... ATAAACGCAACCCAATCGCTTTGTTCGGCCATAGC 1583 31 100.0 33 ............................... ATCTCGACCGAAGCCAGCCCCTCAGCGCAGACC 1647 31 100.0 35 ............................... AGCTCGATCTCGCTGCCGAACGATCCCGCCTTCTC 1713 31 100.0 35 ............................... ATCAGGTTGTCGAGCCAGCCAACGCCAACGCAAGC 1779 31 100.0 35 ............................... ACCCGCAATCCGGCCGTGATCGCCTACAACATCCT 1845 31 100.0 33 ............................... AGGGAACGCGCCTGCTGAACAACACCGGCTCGG 1909 31 100.0 35 ............................... GCGCTGATGAGCGCCGTGCAAGGCTACCGCTTCGG 1975 31 100.0 35 ............................... TGACTGGCGAAGTCGTGACCGGAGCAGGAGCGGCC 2041 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 32 31 100.0 35 GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Left flank : GG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 689-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELD02000022.1 Paracoccus aeridis strain JC501 NODE_47_length_13771_cov_28.133251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 688 31 100.0 34 ............................... ACCGGCTCGTTGCCGAGAACCTCGTCCACCATCC 623 31 100.0 35 ............................... ACGTCCGGGTTGCCGCCGTCCTTCCAGTCCCGCGT 557 31 100.0 35 ............................... GCGATCACCCCCGAGGCGTGGAGCAAATGGAAGAG 491 31 100.0 34 ............................... GTCGTGGCGCTCCGGCCGACGAGCCAGAATGCGG 426 31 100.0 35 ............................... ACCAGCACCGTTGGGTCAACAGCGAAGCCCCAGTC 360 31 100.0 35 ............................... ATCGCCTGCGTGGCGGCGGTCAGCGCGGCCATCCC 294 31 100.0 35 ............................... GTCCGCTCTCGTCTCGCGGGCGCCGCACCCCAGTA 228 31 100.0 34 ............................... AGGTCCTGGTGCCGGGCGTGCAGGACGTGGCAGC 163 31 100.0 35 ............................... AGGGCGACAAGGTCGAGCGCATCGTCGGCGGGGAT 97 31 100.0 35 ............................... GGCGAGTGCGTCCTGTTCGAGGTCAAGGCCGAGGG 31 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 11 31 100.0 35 GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Left flank : CGACGGCTATCCCCCCTGGTTCTGGAGCTGAGATGCTGATTCTGGTCACCTATGACGTGGCGGTTCAGACAGAGGGCGGCGCAAAACGCCTGCGCCGCGTAGCTCGCGCCTGTCAGGACTGGGGCCAGCGAGTGCAGTACTCGGTTTTCGAGATCGAGCTTGATCCCGCTCAGTGGATCCGGCTTAAGGCTCGGTTGGAAGAAACCATCGATCCGGACCACGACAGCCTGCGATACTATTATCTCGGCGCGAACTGGACACGCCGCGTAGAGCATGTGGGCGCCAAGCCGACAACCAACTTGGTCGCCCCGCTGATCCTGTGATGCGAACCTGTAGCGTGTCGTCTGGGACGGCTAGGTTCGCACATGCCGAATGTATCTGATTTTACTGGATAACTGATCTGACCTTGCTTGGCAGAATCCGGTCGGGCATCCGTTCGGCGGGGGTTCGCAGGCCGTTCGCCATTTCAACCGTAAGCTCAAGGGATTACTGTAACTGGA # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2-3225 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELD02000050.1 Paracoccus aeridis strain JC501 NODE_114_length_3446_cov_22.130877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2 31 100.0 35 ............................... TCTCCGTCATCACCGACGGCACCGCAGCCCGTGAC 68 31 100.0 35 ............................... GCCATAGGCGCGGCCGTGCGGGGCTTTGACCCTGC 134 31 100.0 34 ............................... TGTGTGAACTTCCACGTGGCTTCGTTGGCCGGGT 199 31 100.0 35 ............................... GGGGTCGAGACGCTTTGCTCAACACCGTTGACCTC 265 31 100.0 34 ............................... TGAAATGGTATGCGGACAGAGGATATCCGAACGG 330 31 100.0 35 ............................... GGCGTCATCACGTGCCATGGCGTCGGCGGCACCGT 396 31 100.0 34 ............................... ACCTGCGCGCTGCCAGAAGATGCCCTGCCTGCGG 461 31 100.0 35 ............................... AGCGAGGCGATGCTGACCCGCGCAGAAGGCTCGGG 527 31 100.0 34 ............................... TTGAGCAGCGTGGAGGATCGCAGGTTGCCGGGGC 592 31 100.0 34 ............................... TGCGGGACTTGCGCCGACGAGGATGCCGGGGAAT 657 31 100.0 35 ............................... ACGGTGCGCTACTCGTCATTCGCGGCCGGGATCAC 723 31 100.0 34 ............................... CTCACCAGCGAGCAGTCGTCTGGCAAGGTCGATC 788 31 100.0 34 ............................... ACGGCATCAGCCACCTGACGACCAGCCATGAAGG 853 31 100.0 33 ............................... CCGGGATCTGAAGCAACGCAATTCAAGACTGGC 917 31 100.0 34 ............................... GCTGCGGTCTATGACCGGGTGCTGCGGCCCCTGC 982 31 100.0 34 ............................... CTCGATCCACCAGTCCGGCCACTTGTCGCCGCGT 1047 31 100.0 33 ............................... CGTGTCGCGGGCGCGGGGTTGATCATCGACAAT 1111 31 100.0 35 ............................... TTGGTTATCATCCGCCAGAACAAGCGCGTCGAGAC 1177 31 100.0 35 ............................... CACCACTGGACGTGGTTGACGCCGCGCTCGCCCAG 1243 31 100.0 34 ............................... ATCGCCCGTGGCGCGGTGATCCAGCCCTCGACCT 1308 30 96.8 34 ....-.......................... TGCTTGGGAGTCATCACGTCTCTCCTTGCTTCGG 1372 31 100.0 34 ............................... TGAACCAGGCGACGAGTTGCAGGGTCATGGGCGT 1437 31 100.0 34 ............................... TATCCGTGGTCGAGGCCATGGGGCGGCTCAAGGG 1502 31 100.0 35 ............................... TGGGCGACGGGGGAGACGTCGGTCGGGATCGGGCA 1568 31 100.0 35 ............................... GACGCGGAGGCACAGGGCACCATCGACCGGCTGAG 1634 31 100.0 34 ............................... GTCATCATCACGCCGTCCGGGATGGCAAGGCCGA 1699 31 100.0 35 ............................... GCCAGCCGGACGGCTCACTGATCGGCAATCCTAAC 1765 31 100.0 34 ............................... ACGACCAACCTTCCAGCATCCACGACGACGAAGG 1830 31 100.0 33 ............................... GCTGATTGATCCGCTCCGTTGGGGCTGGGTCGA 1894 31 100.0 34 ............................... TTCATGAGCGAGGTGAACAAGTTCGAGGTCACGG 1959 31 100.0 33 ............................... TTTCAAACGTGCATAGGGTAGAACAGTATCCGA 2023 31 100.0 34 ............................... AACACCGCGCGCAGGGCAGAGACGGAAGCGGCTT 2088 31 100.0 34 ............................... GTCGCAGAGCCGCCAGTAGTCGCGCAGTTCGGCC 2153 31 100.0 34 ............................... ATCACCACGGCGTCAAACTCGGGCACGGCAGGGT 2218 31 100.0 34 ............................... TATGACGGCGACCAGTGGGACGAGGCCGACGCGC 2283 31 100.0 35 ............................... TTCGGACACATCGCTGTTTCGGTTGAGGGCGCGGC 2349 31 100.0 35 ............................... GCTTCGGATCGGTCGGGCCTTCGGCTGCTGATCGC 2415 31 100.0 35 ............................... CGCCATGCCCCAGAAGAAGTCTCGAAACTGCACAG 2481 31 100.0 34 ............................... GCTGACGATGTTGTGACCTCCGCTGTCAATGACG 2546 31 96.8 32 .......A....................... ATCGCAGATGGCGTTCAGTTCTGCGTCCTCGC 2609 31 100.0 34 ............................... CTTAGGTATCATCCTCTGGATACCCTCAATGATG 2674 31 100.0 35 ............................... CGTTGTGGGATTGAGGACGCGGCGGCGGAGGCCAA 2740 31 100.0 34 ............................... CTGCATCTGCGCGACCACCCCGATGCCGAGCCGC 2805 31 100.0 34 ............................... CGGTTGGTGCCTCCTCCAAAATGCCGAATGGGCG 2870 31 100.0 35 ............................... GCGCAGGTGACGCCGTAGCGCCGGGCGATCTGGAC 2936 31 100.0 33 ............................... ACCTCCACCTCGTCGGCGGGGAAGCTGCCGATG 3000 31 100.0 34 ............................... ACCTCCACCTCGTCGGCGGGGAAGCTGCCGATGC G [3013] 3066 31 100.0 34 ............................... ACCAGCCGCGCCACAGCGCAGCCGATGGGTTGCC 3131 31 96.8 33 .......................G....... TTGACGGAGGCCGAGGAAACAAGACCGGCCCAT 3195 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 50 31 99.8 34 GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Left flank : CG # Right flank : GACGCGATCCTGCGCGCCCACAGCCTCAGCCTCAGCGCCAGCCGGTCGGACAGGTAGGGCAGACGGCTCTGTGCCGCGGTGACCCGCGCGGGGTCGATCCGGCGACCAGAACCTCCGGGTCGTAAGCGTCCGGTCTGACTGCCCTGCCGCGCTTGGAGAGTGACGGATAGTGTCCACTATGGATGGTGGACACTATGGGGTGGCCCGTGGCGCGTCGGACAAAGCGGCTCTGGACGGACGAGGAGAAGCGGACGATCTGCTTTCAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.10,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //