Array 1 334807-335932 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNU01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51285 N51285_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334807 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 334868 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 334929 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 334990 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335051 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335112 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335173 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335234 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335295 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335356 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335417 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335478 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335539 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335600 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335661 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335722 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 335783 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 335844 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 335905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352191-353854 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNU01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51285 N51285_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 352191 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352252 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352313 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352374 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 352441 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352502 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352563 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352624 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352685 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352746 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 352807 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 352868 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 352929 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 352990 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353051 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353112 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353173 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353234 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353295 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 353398 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353459 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353520 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353581 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353642 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 353703 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 353764 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 353825 29 96.6 0 A............................ | A [353851] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //