Array 1 30600-27871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPMD01000011.1 Clostridium sulfidigenes strain 113A c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 30599 37 100.0 36 ..................................... TATTGTCGTCGCCTGTGGCTGTCATTTGTATGAGTT 30526 37 100.0 35 ..................................... AAGTACTCGTCGGGTCCTACTTCCCTAAATTCTGT 30454 37 100.0 35 ..................................... CGGTCGGGCGTCGCTGTTACTCCTATGACCCTAGC 30382 37 100.0 36 ..................................... TAGTATTAAATCCTCTACAGCCAGGATGCACAGTTC 30309 37 100.0 36 ..................................... ATTTCTGCTAGATTTAATTCACCATCCCTATAAGCT 30236 37 100.0 36 ..................................... TTTCTTTTAGCTTGTATGCTATCACGTACCACCTTC 30163 37 100.0 36 ..................................... AGTCCTAAGTAAGCTATTGCCATGCCGTCGCCCCCT 30090 37 100.0 37 ..................................... TGTGTTCTTTTGCTTACGTCTGCTATTGCTAGGTCGA 30016 37 100.0 36 ..................................... TTATTCTCTATTTGAGATATAAGATTTCTAGTTATT 29943 37 100.0 34 ..................................... TTAAGGTATCCCCTGGTAGCTGTAGTAGCTTTCC 29872 37 100.0 37 ..................................... ATATCCTTTACCACTTCCATATCTATTCCTCCATACT 29798 37 100.0 36 ..................................... AATAAGTCCATATTTACCTCCTTAATCGACCTCTCC 29725 37 100.0 35 ..................................... TTGTCATTTGTTTTACATCATAACCTTTATTCTCT 29653 37 100.0 36 ..................................... ACTTCCTCCCAAGTCATTTCTCTATCCTCCTAAATC 29580 37 100.0 36 ..................................... ACTACATACTGGACACCATCTGCCTTTCTTAATGTT 29507 37 100.0 35 ..................................... TAGTAAAGAAAATATTAAAGAAGGTTATTTGATAA 29435 37 100.0 36 ..................................... CATATGATGACGAGAGATACCTACTTCATGGAACAA 29362 37 100.0 37 ..................................... AAATTCTAATAAAAGTAAGGGGTTGGAAAAATGGTAA 29288 37 100.0 36 ..................................... ATAGTAGACAGTGTAGCTGTAAATATAGGCGACAGA 29215 37 100.0 36 ..................................... GTAAGGGACGGCGCGGCTGTATACGCAGACCAAGAA 29142 37 100.0 35 ..................................... GTTCTGCATTGCTAGGTATTTCTTCCGCGGGTAGT 29070 37 100.0 39 ..................................... AAGAGAAGTAATTATTTTGGAGGAATTATTATGAAAGTG 28994 37 100.0 37 ..................................... GATTCAATAGCATGTAGAGTATATGATTATATAACCG 28920 37 100.0 36 ..................................... AATAATACATAGAAACTGTGTAGTCTGCATGTAACT 28847 37 100.0 35 ..................................... AATAACTCACAAGAAAACTCGTCTATCCCAGAAGC 28775 37 100.0 37 ..................................... ATTACCTCCCTTTTTCACTCATATCTTATTATTAAAT 28701 37 100.0 36 ..................................... TTGGTATTTCTACACTTCCACTTAGTATTATAGATT 28628 37 94.6 35 ........A.T.......................... CCTAATTCGTACGAAGGTCAAAGTGTTTCTGTTGG 28556 37 97.3 35 ..........T.......................... GTCCTAATGTCATATTTATATAGGACCTCGTCAAT 28484 37 97.3 36 ..........T.......................... ATGAAACAAAGGAAGTTGATGTAATTAGTCACCCAG 28411 37 97.3 35 ..........T.......................... AGATGAATTGCAAGTGAGTATAGATTATGAAGAAA 28339 37 97.3 36 ..........T.......................... TTGATTTCATTACTCGATATGATACGGATGAATTAA 28266 37 97.3 36 ..........T.......................... AGGGAAAAAGTAAGAGTCTTGAACTATATGAACCAA 28193 37 97.3 34 ..........T.......................... TTACTCCTAAATCCGTTAATGCATTTTTAGCAGT 28122 37 97.3 35 ..........T.......................... GCGCGAAGTTAATAGAGAACGTAGCCCAGGCTTAC 28050 37 97.3 35 ..........T.......................... GCAGACAACGCGCACTATGATGGTTCGTTCTTAGT 27978 37 97.3 35 ..........T.......................... AATACATTTCATGTTCAAATTAATCTTATGTTTAA 27906 36 81.1 0 .A.....-.AT..T..........T...........A | ========== ====== ====== ====== ===================================== ======================================= ================== 38 37 98.7 36 GCCATAGAGGCTAATCCATTAAAACAAGGATTGAAAC # Left flank : CCTTGGATATCTTTAAGTCAAAAAAATATTGAAGCTTATAGAGAGGGAAATAAAATAGAGCAGGAAGAAATATTAAAGAAAATTCTAATAGGAAATATTATTTCTATGGCAAAGGGAATAGGCTACACTGTGGATAAAAGAATTACCTGTTGGGTTAATTTAAAAGAAAAAGAAGTTAAGTTAAAAGGTATTAAGCATATAGCATTTACAGGAGATTTTAAAGTGAACTTCAATATTCCAAACTATTTTGGCATTGGTAAATCTGTATCAAGAGGATTTGGAACCATAGAGAAAGTATAAAATATATTTGAATTTTAAGAAGTAGACAAGTGGTAAGTTTTATAACGTTGATAAATCAATAGGTTTTAGGGTATACTAAGTATGTAATGTGGACAGAAATAAGCATCTTTTAGATTAAAAAAGTATACTTAATGAAATTTTTAAACTTGTCTTTAAACTGCTATAAAGGGCACTAATTCAATAGAATTTAAGAAAATGCC # Right flank : TTTTATGAAACCACGTTTTTATCATAGTGCATTTTAATATTTTAGCTAATACGAATGTAGCCTTAAAGAGTTGGACATACTATTAGTGTAAAAATAAAAACTTTAAACATCTATTCTATAAGGAGATGATAGCATGGAATTAATGATAATAGGTGCAGTTATGTATGTAGTAGCAAGAGGTGTTGAAATATTATTAAACATGATTTAATCTCAATAGTAAGAGCAATAAAAAATAAGCCAATGACACTAAAGCGTCATTGGCTTACCTTTATTTATTCTTTATAACATGCTGTTTTATATCTTCAACATCTTTTTTTACGTCTTCCATTATGCTTAATTTATCTGTTATTTTTGATATTATCTCCTGATAGTTCTTTTCTCTCTCTTCTTGCTTTTCATCTCTTTTTTCTTGAGCTTTTAATATATAGAATATTAGAAATATGCTGAGCACTGCCCATATTCCCTGAGACATTGCTATTTTCAATATTTCACCTTCCATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAGAGGCTAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : GCCATAGAGGTTAATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //