Array 1 16-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJR01000033.1 Micromonospora zingiberis strain PLAI 1-1 NODE_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 37 ..................................... CGCGTAGCCTCGCGCGTTCGGTGGCCGCGTACGCCAT 90 37 100.0 37 ..................................... CGCGTAGCCTCGCGCGTTCGGTGGCCGCGTACGCCAT 164 37 100.0 39 ..................................... CCCGCTGTGTGACCTGTGCCCCGCCCGGATGCACTGCTG 240 37 100.0 39 ..................................... GCCCCGGCCGACCTCGCCGGCCGCCAGCCGCTCGTCGAC 316 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GCCGCAATGGAGACCGACCTCAGCGGGTCGGTGAAGG # Left flank : GGCCGCGTACGCCATG # Right flank : GGGCTCGTGAACAGCGCAGATAGCTGCTGCTGATTGCTTACCGAATGACCCCGGTAGGCAACATGTGCGCTTTTGCGCCTTTTGAAGCTTCGGAACCCCATGCTTGCGGCGTGACCGCTTGGGGTTCCTAGATCAAGTCGTCCGCTTACCGGCCTGAGTTGCGTTCGTGGAGTTGTCAAGGTTCCGGCCACGGAGGCCAACGTGCGCTGCTGGGCGATGCATGCCAGCGGCAGGGTGGGCAGCGATTAGCGTACGTGCTTCTTGACCGCTTTGACCTCGCCACATGGGACGGCCCCCAGCATCACCGCGAGGACCGCGCGTTCGCCGATCTTGGGGTTGGCCAGGGCCCACAGGATCGGCATGCCGGTCGGGGTACACACCAGCTACAGCCTCAGCCCTCAGAAGACCGGGAGCGCGAAGCGCAGGAGCCGTTTCCGACCCAGCCGGCCAGGTCCGAGCGCTGGACCATAGGGCGGGACATGCCGCAGGGGATGGGGGTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGACCGACCTCAGCGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23955-24515 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJR01000034.1 Micromonospora zingiberis strain PLAI 1-1 NODE_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23955 36 83.8 34 .........GG.....A............C..-.C.. CTGCGTGGGAGTCAGCCCATCGCCAGCGCCTACT T [23989] 24026 37 94.6 39 .........G.......T................... CACCACCGCACGGATCCGGTTCGGCCCGTCGACCAAGTC 24102 37 97.3 37 .........G........................... GACATCATTCCACGATCACCTCAATCTCTAGCGAACT 24176 37 97.3 39 .........G........................... GCTCGGGCGGAGAGGGCGGGACGGGAGGGGCGCCAGCCG 24252 37 100.0 38 ..................................... CCAATGGTGGTCGGTCCGTCGTCGTCCTGGACGAGGGA 24327 37 100.0 39 ..................................... CCGGGCTACTTTCGGGTAACTTGGGGGTGCCCAAACGGC 24403 37 100.0 39 ..................................... TCTGTTCTCGGACGGCGTGGACGCGGTGGTCGCGTACGC 24479 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 96.6 38 GCCGCAATGTAGACCGGCCACGGCGGGCCGGTGAAGG # Left flank : GGAGCGACACGCGCGTCCCGCACATCCGCGTAGCTGACCACCAGAGATCACCGACCGCGAATATCGAACAGAGCGGCGTTCGCGTTATCGCTGTAGCGGTAATCCACCGCACACTCGTCGAACGCATCGCCCAGCGTCGACAGGTAACCCACGAGCTTTGCTAGATCGTCCTGCCACGACACCGCCAACTGCTCCAAGGCAGAACGACTTCGCCACCCCGGTAAACCCGACACCGCAGCCAGCGTCTCACCATCGACATCCGCAGCGCTCTGCCGCAGCCCTTCGCGCAGATCCCCGCACACGCCGGCTGCCCTCGTCAGCACCTCCGGCTCAACACGCACTTCCGTCACCTGCTGGCCTCCCCCCGCCACAAGGTGAACCTACAGTAGTCACACACTCGCAAAGAGCACCAGCAGATGGCTGCGCCGGATCGATCATCAACCCGACGACGCCACCTCGCCGGCCGTGTTCGTCGCGGCCTTTCGCTTGGTGTACCCGTC # Right flank : GGGCTCGCGAACAGCGAAGACTTCCACTCGTCGACGAGTTTCATATCGAGCACGTGTCCGTATTGCGCGTTCCATGCGCCTACGGCGGTTCGGAACCTCTCGCTTGCGCTGTGCGTGCTTGGGGTTCCTAGATCGATTGAAGTCCGGTGGTCGGGCTGGCCCATGGTTTGTGGAGTTGTCAAGGTTCGGATCGCGGGCGAACGAGTATGTCTTGCTACGCGGTGAGGTTGACCGGTATGGGCACGAGGACGCCGGCGGACTTGCGCCCTTCGATGGGGCGTCGTTGGGCGGCGGCGACGGCGAAGACTCCGAGCGCTTTGGCCTTTTCACCCGGCATCGTGATGTGGTTGCCGTCGCTGGTTGGTGCGAGGTCGGGGTGCTCGATGAGGGTGGTGATGGCGGCGAGATTGAGGGGCTGTCGCCAGAGCGGCCAGAGCATGATGCGTCGTCGGTTGGGAAGTCGTCGCCAGAGGGTGGCGGTAGCGGTGGTTCCGTCTCCG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGTAGACCGGCCACGGCGGGCCGGTGAAGG # Alternate repeat : GCCGCAATGGAGACCGGCCACGGCGGGCCGGTGAAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.10,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 31729-33779 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJR01000034.1 Micromonospora zingiberis strain PLAI 1-1 NODE_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 31729 37 75.7 39 C...TC.GC...TT.A.A................... CACCGGCTGCAGCGTCCCGTCAAAGCCAGCCTTCCGGCC 31805 37 94.6 38 .....G................A.............. TTCATGCAGGTCGACCTGTTCCGGGCGCTGGTGGCGGC 31880 37 89.2 38 A..................C......A.....A.... TACGGCGACCACATGGCCGCTGCCGTCGTGGCGTTCGA 31955 37 91.9 38 .......................T.......CA.... TTGACCTGGTTCAGCGTCGCTTCGCCGCCGTCGAGCGT 32030 37 94.6 39 .....G................A.............. TCACCTGGCGGCACATCGGGATTCGCTGACCCTCAGCAG 32106 37 100.0 40 ..................................... CGGCAGTCGCCGAGGCCCGCGAGGCCGGGAAGGTGCCGGT 32183 37 100.0 37 ..................................... CACAGGCCGGACATTCGCGTCAGCCGATCATCAGCCG 32257 37 100.0 38 ..................................... TGCCGGTCCTTGAGGGTCAGCGTCGTTGCCAGGGCAAC 32332 37 100.0 39 ..................................... GTCGCCCAACCCCACCCCGGCCCCCAAGCCGCCGGCCAG 32408 37 100.0 42 ..................................... CAGCCATGCGACCGCCAGCAGCCCGGCCGCGTCGCCACGCAA 32487 37 100.0 37 ..................................... TCTGCGTCGGAAATGCTGTCGTCGCCACTAATCGGCG 32561 37 100.0 38 ..................................... GCCGTTGGCGTCAAACAGCCCTACATCTCGATGATCGA 32636 37 100.0 39 ..................................... CACGGTGGCGTAGATGGCGTCCACGACGTCGGTTGCTCG 32712 37 100.0 36 ..................................... TTGCACCCTGCCAGTCGCCGGACGGGTGAACAACGC 32785 37 100.0 35 ..................................... TGGTGGCCGGACGCACAGGTGAGGCGGCATCCGAC 32857 37 100.0 37 ..................................... ACTTGTCGGCTGCGCTTGCCCGCGCCGTCAACGACAC 32931 37 100.0 36 ..................................... TGAGCAGCCCCAGGAGCCCGCGTGAGCGCCCAGGAT 33004 37 100.0 37 ..................................... TCACCGCGGCTGTTGAGCGTCCCCACCGCGGTCTACC 33078 37 100.0 28 ..................................... CCAGGTAACCACCCCGGTAACCACCCCG Deletion [33143] 33143 37 100.0 37 ..................................... CCTGGGCCGATTCCGTCTCGCTCGGGTGCACCCCGGC 33217 37 100.0 39 ..................................... CGACGAACGCGGCGAGCAGCCAGCCCGCGACGAACCAGA 33293 37 100.0 39 ..................................... GTCTGGCCCGTCGCTCACGGGCCTAGCCGTACGCTGCCA 33369 37 100.0 38 ..................................... CTGCTCGATCACGTTGAGGTGCTGTCTCCGGCGCAGGT 33444 37 100.0 38 ..................................... CAGATGTGGTCGAACGCTCCGCTCTTGGCCCCGGCGAG 33519 37 100.0 39 ..................................... TCACCACCTGGTCGCCATCGGCGGGACGTCGAGGAGCAG 33595 37 100.0 37 ..................................... CGCGTAGCCTCGCGCGTTCGGTGGCCGCGTACGCCAT 33669 37 100.0 37 ..................................... CGCGTAGCCTCGCGCGTTCGGTGGCCGCGTACGCCAT 33743 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 28 37 98.1 38 GCCGCAATGGAGACCGACCTCAGCGGGTCGGTGAAGG # Left flank : AAGCACCAGCCGGCCCTCGACGGTGCGGCATGACAGCTAGCCACGGCTGACACCTGGCGAACTCACTGCCCCAATGGAGCGCACCGTCAGTCTTCTGCGGCTTGGGCTAACGCGGACGCCGTCGATCCTTCCGGACCGACGACCCACTACCGTCACCGCCGCCATGGGCAACCCAGAGCGCGACAACAACCCGCCGTGGCAGACCATACTCGCGTGCCACGAAGGTGGGCGGACAGCCCTGGCGCAGCCTGCGTACCACCTGACGTTCGATCGACCGAGGTACGCGCATGTCGAATCTCTACTTTCAACTCGATGATCAGCGATGTGCGCGCTCAGGGAGCGTAGCATCACTGAGCGTTAACACACCAGATCTGATGCGAAGGTTCAGATGGCTGGCCTCTAGCTAATTCACTGAAGTGCCCTCGTCCGGATGCCGATCGAACTCATCCGCGTACCCCATCACGCCCCAGCTTCCGGCCGGATCCCAGCGACGACGAACG # Right flank : C # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGACCGACCTCAGCGGGTCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 173726-174213 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJJR01000007.1 Micromonospora zingiberis strain PLAI 1-1 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 173726 37 97.3 38 ........T............................ CTCTCCGACCAGTTCGGCGGTGCCGGCATCGTTCAACC 173801 37 100.0 40 ..................................... CGCTCCTGGTGGATCGTGACCTGGTCGCCGGGAGCTACCG 173878 37 100.0 39 ..................................... GTCGTAGGGCTCGGGCCAGTCGGGGCGGGTCACAAGCTG 173954 37 100.0 39 ..................................... CCGGTGCATGCACGACCAGTCCCACACCCGCACCGGCTT 174030 37 97.3 38 ..............C...................... CTTGTGGCCGGCAACCCGACTGACCGGGATCCCGAGTC 174105 37 89.2 35 ......T.......C....C...............G. GACATCGGGATCCGCCTGGCCGCCACCGCGAGCGT 174177 37 94.6 0 ...................C...........T..... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 96.9 38 GCTGCGCCCGGCCATCGCGTCGGGCGAGGATCGCAAC # Left flank : CGACCTACGGTGACCTCCGTGCCGGTCGCCGACGATCGGATGCGGCGATGAGGGGCGAGCTTCGGTCGTGAGTACAGCCCTGTTGTGCGCTGGCGCAAAACGGCCGGCCGGCGGCAGCGACACCCCCCCCGGGCAGTCCTGCCGCCGGCACCCTTCCACATATCGCCCCGAAGATCGTGATCGCGTTTCGCGATCTCGACTACCACCGACGCGGCTCGACCGCGTGCGTGTCCTGACAACGGGATCCACCCCGGCAAGCGCTACATGGCCCAGCAAGCTCGACGCCCTCCGTCTGATGGGACCGATGCCCGTCGCCACGTCTCCAACTTCGCCCCGTCGGCCCCAGTAGAGTGATCGGATGCGCCGATGATCTAGGAACCGGTAGTGCTCGCGGAAACGCGGGGAGGCTCGAACCAGGAAAGGCGGCTAAAGCTGGCGAATCGGACGCTGTAATAGCAGGTAGCGCATCGTCAATGCACTATATTTGCTGCTCCTGTGCT # Right flank : CGCCCAGCAGGCCGTGGGCGCGGCCGTTGGGGAGTGGTTGGCTGGCTTAGCCGGCGGCGTGCAGGTGAACCAGGAACCGGCAACCGGCTCCGGCGTTCGTGACCTCGACCCGGCCGCCGTGCGCCTCGACCAGGCCACGGACGATCGCCAGGCCGAGCCCGCCGCCGACCGGACCGGAGCTCGGCCGGGCCGGTGCGTCTGCACCGGTCGGGCTGCGCGCCGGCTCGCCACGGAACGCCACCTCGAACACCCGGGGCAGGTCGGCATCGGGGATGCCGCCGCAGGTGTCGGCCACCGCCAGCCAGGCGCGGTTGCCGTCGCGGCCGGCGGTGATCTGTACCATCCCGTCGTGCGGGGTGAATCGGACCGCGTTGCGCAGCAGGTTGCCGACGATACGGGCCAGTTCCGGCTCGCTTGCCACGACCGCCGGCCAGCCGAACTCGGCGGCGACCAGCCGGATGCCACGCGCCCGCGCCAGTGGCGCGGCGGAGGCGAGCGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCATCGCGTCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //