Array 1 218213-216254 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLW01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS43-4 scaffold2_size825520, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 218212 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218151 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218090 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218029 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 217967 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 217906 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 217845 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 217784 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217723 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217662 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217601 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217540 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217479 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217418 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217357 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217296 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217235 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217174 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217113 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217052 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 216994 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 216933 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 216872 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 216811 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216750 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216689 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216628 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216567 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 216466 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 216405 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216344 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216283 29 93.1 0 A...........T................ | A [216256] ========== ====== ====== ====== ============================= ======================================================================== ================== 32 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236111-234495 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHLW01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS43-4 scaffold2_size825520, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236110 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236048 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 235987 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 235926 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 235865 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 235804 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 235743 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235682 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235621 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235560 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235499 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235438 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235377 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235316 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235255 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235194 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235133 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235072 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235010 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 234949 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 234888 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 234827 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 234766 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234705 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234644 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234583 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234522 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //