Array 1 218438-216697 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRU01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain 72 NODE_2_length_664530_cov_23.4464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218437 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 218376 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 218315 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 218254 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 218193 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 218132 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 218071 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 218010 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 217949 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217888 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217827 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217766 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 217704 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 217642 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 217581 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 217520 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 217459 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 217398 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 217337 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 217276 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 217215 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 217154 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 217092 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 217031 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 216970 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 216909 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216848 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 216787 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216726 29 93.1 0 A..............A............. | A [216699] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235490-234608 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRU01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain 72 NODE_2_length_664530_cov_23.4464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235489 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235428 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235367 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 235306 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 235245 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 235184 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 235123 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 235062 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 235001 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 234940 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234879 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234818 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234757 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 234696 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234635 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //