Array 1 3345-2775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKSB010000143.1 Acinetobacter baumannii strain Ab175 NODE_143_length_3833_cov_26.4774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3344 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 3284 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 3224 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 3164 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 3104 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 3044 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2984 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2924 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2863 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2803 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TCAAACCAAATGGCAATATTTCCACGATTAATGAGAGCTCGGTTATATGAAGACCAATTGGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGG # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATTACCCAACGGAAATTTTCGCATACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47586-47137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKSB010000017.1 Acinetobacter baumannii strain Ab175 NODE_17_length_52908_cov_15.604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47585 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [47575] 47524 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 47464 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 47404 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 47344 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 47284 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 47224 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 47164 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : TATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29870-22155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKSB010000013.1 Acinetobacter baumannii strain Ab175 NODE_13_length_63328_cov_16.8282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 29869 30 96.7 30 .............................G GTCTCAATTAACCCAATCAGTTAAAGATGC 29809 30 93.3 30 ............................AA CCAAGAAATTATTGTTTCAAGAGAATTAGC 29749 30 96.7 30 ............................A. TGCAAAAACTTGATATTCACCGTTGTCATG 29689 30 93.3 30 ............................AC TTGACGAGGTAAAGGCCGCGTAGCACCAAG 29629 30 96.7 30 ............................A. CATTCGACAAGAGCAGGGTAGTTAATAGTC 29569 30 93.3 30 ............................AG ATTGCTGAAACTAGCTTGGCAGGTATTCTA 29509 30 100.0 30 .............................. TATATGGGTTTACCTTCCCATCTTCTAGGC 29449 30 96.7 30 .............................G ATGCGTCCTTTAAACAACAGCAATAACGTT 29389 30 96.7 30 .............................C AAAATTCAAGAAATTTCTGGAACAAGTTGA 29329 30 93.3 30 ............................GG ACAAAACATCTAGCGTCACAAAAAGTACTT 29269 30 96.7 30 .............................C TGACTCTGAAAACATCTTTGAGTTCAAAGA 29209 30 93.3 30 ............................AA GCTCAGATTTAACAAAATCTGAAATTTGAC 29149 30 93.3 30 ............................GC CAACGACTTTAAACTCTTTAGTATTGTCAT 29089 30 93.3 31 ............................AG TGACAGAGGTCGTTCTCGGTACAGTTAGGGA 29028 30 96.7 30 ............................A. ATGTACTATACATATAAGCCATATAATCAG 28968 30 93.3 30 ............................GA AAGAAGGAATCATCCAAGATGGTAACGGAT 28908 30 96.7 30 ............................A. TGAATGAGCCAGAAACGTAACCAGTGCCAC 28848 30 96.7 30 .............................G TCCACTCCAGACCAATCACAGTGTCCATGT 28788 30 100.0 30 .............................. CAGTAAAAATGAGGTACAAGCAATTTGTCA 28728 30 93.3 30 ............................AC CAAACGGATATGTGAGTGTTGTTCGTATTG 28668 30 96.7 30 ............................A. AGGTTTGACGAGTAAGCGGATGAATCATAT 28608 30 93.3 30 ............................AC GAACCGTTTTAAAGCCGTACAACACATCTA 28548 30 93.3 30 ............................CG TCACGGCAAGCGTGGATCTGTAAATGTTCA 28488 30 93.3 30 ............................AA AATGTCTGATCCAGCATCACGTGAATAAGA 28428 30 93.3 30 ............................AA ACAGAGTGTTATAGCCATGCTTAACACCTT 28368 30 93.3 30 ............................AG TCAGGCACTGGTAAATCAACAAGTCTTCGT 28308 30 93.3 30 ............................GA CTAATAGCAAGTTAGATACAACTAATTCTA 28248 30 100.0 30 .............................. GAAAACCACCACCAGTTCCTTTACCACCTT 28188 30 93.3 30 ............................GA TTTAAGCTGTCCATTATTAGCCAGCCAAAC 28128 30 93.3 30 ............................GG TTACTTTGCCAAACGGTACTGTTATTCCGC 28068 30 96.7 30 ............................A. GCGCGGCAACCATGCGGTCTATGACTTCCA 28008 30 96.7 30 .............................G ACTCACCTCTGCAACAGAAGTAGGTGTTGC 27948 30 93.3 30 ............................CC AAGAAGAAAGGTAAAACTTGGAAACACTTT 27888 30 96.7 30 ............................A. TCAAATAAATTTTCTGAGTTTGAGCCTTCA 27828 30 93.3 30 ............................GA GGAGTAAGACATGGCTGATAAGGCTTTAAT 27768 30 100.0 30 .............................. TACGCTGAACATTCTTGTTCTGACGCCAGA 27708 30 100.0 30 .............................. GTCGCGGGTCGCCCATGTTTTCAATGGCCT 27648 30 96.7 30 .............................G ATTTGTGAGCAAGATTGAACGTTTCGTATC 27588 30 96.7 30 .............................C AATAAAAGATGGGGCAACTAGTGCCCCGAT 27528 30 96.7 30 .............................G AACGTCAGATCTTTGCTGACATCGAGGGGC 27468 30 93.3 30 ............................AA GCAGCAAAGTTAATGCTGTATAAAGTATTT 27408 30 93.3 30 ............................GA ATTTATCGGCATACTTGGAAACTGGTATTT 27348 30 93.3 30 ............................CA ACAATTCAGGATCCTGTAACTAATGTCGTT 27288 30 93.3 30 ............................AG TACGTTACAACATCAAATTTGGTCAAGGTC 27228 30 96.7 30 ............................G. CAACACAACGAACATGGGTTGGTATGACAG 27168 30 96.7 30 .............................G TTGTTAGGGCTATTTCTGCTTTATCCGATA 27108 30 96.7 30 .............................G ATGGTGCTGCTCCTCCTAGCCCTACGGGCA 27048 30 93.3 30 ............................CC TGAGCTATTAGCTAAAGAAAGCAGCTTTAA 26988 30 100.0 30 .............................. CAAAACTGGTCTTGGCGGTGTCTTAGTGAA 26928 30 100.0 30 .............................. GCACTAAACGCTTAGTTACAGACCAACCTT 26868 30 96.7 30 .............................A AAAAGGCAAGCGCACTCGATGTACCAAAGC 26808 30 93.3 30 ............................GC CAAATTTTGGCTTTTCACATGTCTAAATGT 26748 30 93.3 30 ............................AA ATACATTATGACCCTGCAATAACTTTGCAG 26688 30 96.7 30 .............................C AAACAAAACCTAATGACCCTACAGCACCTA 26628 30 100.0 30 .............................. AGACATTTTTAAGCCAGTAACAATAACTGT 26568 30 93.3 30 ............................AA CGTTTTTTTAAACGTGACTCAAATCGTAAA 26508 30 93.3 30 ............................CA AGCACGAGGCCAATCTAGCATTCTTGCTAA 26448 30 93.3 30 ............................AG GCAACAGCAATACAAATTGCTATGCCTACA 26388 30 93.3 30 ............................GC TATGGACAGGTTCGTTTAAAAGTTAAATTC 26328 30 93.3 30 ............................AG TGAGGATTCACACCTAGAAACTGGGCAGCT 26268 30 96.7 30 .............................G CTGCTTGAACAACATGAATTGCCCATTCAG 26208 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 26148 30 93.3 30 ............................AG AAGCGTCATGAATATTTGGTTTGGCTTGAA 26088 30 96.7 30 .............................G ATCATTAGTGCCTCTTCGGAAATCAACTTT 26028 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 25968 30 96.7 30 .............................G AAAATAATTAAATGGTCTATCACCGTCTTC 25908 30 93.3 30 ............................AG TAGATGCAGCACACAGCAATCAGGGCGCTC 25848 30 93.3 30 ............................AG CGCGGAAGAGCATTCGGGTGAGTTGGATTA 25788 30 93.3 30 ............................AG GCAAAAGGAACGGCTGGCTAACGCCACTAT 25728 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 25668 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 25607 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 25547 30 96.7 30 .............................G ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 25487 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 25427 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 25367 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 25307 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 25247 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 25187 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 25127 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 25067 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 25007 30 100.0 31 .............................. ACTAGCCCATATGTCTAAACCGAATCCACGC 24946 30 96.7 30 .............................A AGCAAAATGCTTTCGGTATTGCGAATAATC 24886 30 96.7 31 .............................C ATTGCCACCTCCGAAAAAGTATTACCTGGAC 24825 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 24765 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 24705 30 93.3 30 ............................AG AAGGGTATAGCAAATATCGTGATGGAAATG 24645 30 96.7 30 ............................A. CATCGCCAGCAACAAACTGCAATGAGCCAG 24585 30 100.0 30 .............................. GGTGTGATCATCAATACAGATGGGACAGGT 24525 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 24465 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 24405 30 96.7 30 ............................A. TATCTAAGCGTCCCATTAGAAAACCTTTAT 24345 30 96.7 30 ............................A. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 24285 30 96.7 30 .............................G TTGACCCATCTATTGATGCATCTGTAAATA 24225 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 24165 30 96.7 30 ............................A. GTGAACATGCATGCATTGATGCAATATGCG 24105 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 24045 30 100.0 30 .............................. TTTCACCTGATGGATGCTGTATTAAATCGC 23985 30 93.3 30 ............................AG AGGGTTATGTTTTGGTTTCTAAGGATAAGT 23925 30 96.7 30 ............................A. CATACATTAACTTTAAATAATCATTCTGAC 23865 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 23805 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 23745 30 93.3 30 ............................AG TTGCCCGGATCACGACGATCATTAGAATAA 23685 30 100.0 30 .............................. GGAGTCATCAATAAGAAACAATCCATTTAA 23625 30 96.7 30 ............................A. CTAATCGATGGTGAAGATTTTGAACAAGAT 23565 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 23505 30 100.0 30 .............................. AATGCAATTCGGAGCATGGCGTACCGAAGA 23445 30 100.0 30 .............................. GTGTGGACTCCTCAATCAGCATCTTGAAAT 23385 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 23325 30 96.7 30 ............................A. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 23265 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 23205 30 93.3 30 ............................AC TTACCAGACACAGCACCTTCTTGAAGCATC 23145 30 96.7 30 ............................A. GACGGTTAGTTACTTTTGATGTACCGCCAC 23085 30 93.3 30 ............................AC TAACTCACCGCGATAAATAGACGCGATACC 23025 30 93.3 30 ............................AG AGACACAGAAAAAGAATGTGAACAATGGGC 22965 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 22905 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 22845 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 22785 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 22724 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 22664 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 22604 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 22544 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 22484 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 22424 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 22364 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 22304 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 22244 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 22184 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 129 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //