Array 1 126037-125520 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126036 29 100.0 32 ............................. TCAGGATCGGCATTCGACACATAGCCCCCAAG 125975 29 100.0 32 ............................. TGGGAAGATCGAGAAAGTGGGTTAACGCAAGA 125914 29 100.0 32 ............................. AACGTCCGCTACTGCCTGTGAGGCCCCCATGT 125853 29 100.0 32 ............................. GGCGACTTCCTTGTGGACCTCAACACGCGCGC 125792 29 100.0 32 ............................. GGCGGCATCGTCGGCGGCGCCGAGTGGGTCAA 125731 29 100.0 32 ............................. ACTGGGGCACTTTCGACCCGTTCGGGCCCCGG 125670 29 100.0 32 ............................. CGCGTGACCTCGTGGACGCGACCAAACTCAAC 125609 29 100.0 32 ............................. CCGAAAAAGCACGAGATCGAGCGGATCATCGA 125548 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CCTTTGGTCGTAGCAGGCCAGGCGTTGGCCGGGTAATTCTCGGGTGGGAAGGCGGATGCCGCGAGCCAGGTCCGGTCCGAGGATGTCAGCGGTGCGGGAGGGGGCTGCGCTGCGGTCTTGAGGTGGTCCTGGCACGGTGTGGCTGCTGTGGGAGCGGTTGGGTATCTCCGGGAGTGGCCGCGTCAGGGACAAGGCCGCCCGCCGTGAGCTGCGCTATGTCGCCGTCGTCGTCGGTCGCGAATGCGCCGCTGGGTTCCCGAGCGGCGACGCAGCGTCTGGCAGCGCAGCCTGGCGGGCCGGATACGGTTCCCCAACCAGTCGCTGGCTTCCTGACCGCGGGCTGCTCCGATGATCACGTATGCCTGTCGTCGCCTGCAAGGAGTAGCGTGATCAGGTCATTGCACTCGCGGCTCGAAGGAACCGTTCAGGTGGGAATGTCGGAGTTCTCGAAAGTAAGTAAAACCGCGTACCGCGCCGGGTAAAACTGCTGGTCGCGCCCT # Right flank : AGCTACTCGCCCGGAAAGCACGAAGTGGCCCGGTGGTCCCCGCGTGCGCGGGGACCATATGCCCTCGGCCTGCAGCGTTCCCTACTGCCCGGCTGCCCCTGCGGGAGCGGACGCCTGCGCTGGTTCCGGATGCGGCCACGAGACAATCGGCTCATGGGGATCGACCTGCAACTGCACAACGGCCGCCCGCACTGGCCCGGCCGACGCTCGAAGCGCAAGCCGACAATGATCCGCCAGTCTCACGGGCACGGCGAAGCGCTGGCTCAGCTCATCGCCGCGCTTTACCGCCAACACGTCGGGAAAGCTCTGGACAGTCGACCCGTATAACGACACCATCCTCAACGAGCAGGAAGCCGAGGCCGCACTCCGCGAGATCCCAGATCTTCTGGACCGCTGCACCGACAGCTCACAAACCGCCGCGGTCCGCGACCTCGCCGAATACCTGAAGGACTGCGCCGCCACTCCCGGCAGTTATCTCGTCTTCGTCGGTGACTGACCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137475-137808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137475 29 100.0 32 ............................. GTTCACGATGCGGTCCCGCCCCAGGATCGGGG 137536 29 100.0 32 ............................. GAAGACAACACCAGCGCATGGGAGAAGTGCCT 137597 29 100.0 32 ............................. CAGCAGCACGACCGCGAGTGCAACCGCTACCG 137658 29 100.0 32 ............................. TTCGGACTCGTGGCTGCGGACGGGACCGTGAT 137719 29 100.0 32 ............................. GGGCCATCGACCATCGCCGTGCCGTGTTCGAA 137780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : GGTGCTGTGGTGACCGTCATCATCCTCGCCAACTGCCCCGCCGGCCTGCGCGGCCTCCTCACCCGCTGGCTCCTGGAAATCTCCCCCGGCGTCTTCCTCGGCTCCCCCACCGCCCGCATCCGCGACCTCCTGTGGGACGAAGTCCGCCAGTACGCCAACCAAGGCCGCGCCCTCCTCGTCCACCAGACCGACACCGAACAAGGCTTCACCTTCCGCACCCACTACCACGCCTGGCACCCCACCGACCACGAAGGACTCACCCTCCTGCACCGCCCAGCCCCCCGAACCACCCCACCGGAAACCGGTCACCCGCCCCAGCCCCCGAAACAGAATTGGAGCAAGGCCGCCCAACGCCGCAAATATGGTCGCCGATAGCCGTCCAGCATGCTCCTGCACGAACGGATTAGCCGCCAGTACCTAAACATATGCCCGTTATGCCGGAAGCTCAGGAAGTAAGTAAAAACCTCTCCCCCGCCTGACAAAGCCGCTGGTCACGACCG # Right flank : CTACTTCGGCGACCGGGGACCACCCCCGCATGCGCGGGGACCACTCCCGCTCGGCAATCGATGCCACGGCGGGAAGGGGACCACCCCCGCATGCGCGGGGACCACGGCGGCGGGAAGCGGGGCGGTTCCCGCGCGCCGGGACCACCCCCGCATGCGCGGGGACCACTCAGCAGTCGCGCTTGCCGAGGTTGAAGCCTCGGGACCACCCGCATGCGCGGGGACCACCGCCGTAGTGCCTTGATCGCTGCGTGTCGATCGGGACCACCCCCGCATGCGCGGGGACCACGGTGGAAGGACTGATCCAGTGCGTACGCCCCCGGGACCACCCCCGCATGCGCGGGGACCACGGGCGTTGCCCTCTCTTCCGGAGAATCCGCCACGGACCACCCCCGCATGCGCGGGGACCACCGTCCCACGGCGGGGTGGCGGCCTTGGGCGTCGGGACCACCCCCGCATGCGCGGGGACCACGCGGGGCGATTCGTCTGGCCGCTGCCGCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 138582-137823 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138581 29 100.0 32 ............................. TACGTGGAACGGGGCCAGCTGCAGGCCGCCTG 138520 29 100.0 32 ............................. GGCAAGGCGGTGTTCCCGTACTGCGCGTCGCG 138459 29 100.0 32 ............................. AACGTTCACAAGTACAGCGCCAACGTGTCGGC 138398 29 100.0 32 ............................. CGGCCTGCACGGTGGCGGAAGGGCTGGGTGCT 138337 29 100.0 32 ............................. CTGAGCGGCAGCGGCCAGACGAATCGCCCCGC 138276 29 100.0 32 ............................. GACGCCCAAGGCCGCCACCCCGCCGTGGGACG 138215 29 96.6 32 ............................G TGGCGGATTCTCCGGAAGAGAGGGCAACGCCC 138154 29 100.0 32 ............................. GGGGGCGTACGCACTGGATCAGTCCTTCCACC 138093 29 100.0 32 ............................. GATCGACACGCAGCGATCAAGGCACTACGGCG 138032 27 93.1 32 ....................--....... GAGGCTTCAACCTCGGCAAGCGCGACTGCTGA 137973 29 100.0 32 ............................. GGCGCGCGGGAACCGCCCCGCTTCCCGCCGCC 137912 29 100.0 32 ............................. CTTCCCGCCGTGGCATCGATTGCCGAGCGGGA 137851 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGCCGCAGGCTCGCCAGCTCGGCGGTTCCGGCTACTGGCGCCTGCCGGTCGGCGACTGGCGCATCCTCTACCAGCCCGACGACCACACCGTCACCGTGCTCGTCCTCAAAGTCGGCCGCACCACCTGAACCAGCACCACCTCCAGCCAAGCCGGCATGGGCCCGTCGCGTGGTGGAGAAGGTCGACCGGCCGCCGCGAGCTGTAGTACGCCGCCGGTGTCATCGGTTCCGAGCGCGTGGCCAGGTTCCCGGCCGAGCGGCTGACGCGGCGTCTGGACGGTCCAGCGTGGCGGGCCGGATGCGGTTCCCGATCCGATCGGCTGGCTCCTCGGCCGCAGGCTGCGCCGACGACGACACGATGCCTGTCGGCACCTGCAAGCAGTAGCGTGATTAGGTCACCCCCACTCCCGCCTCGAATGAGCCTTTCAGGTGAAAATGTCGGAGTCTTCGAAAGTAAGTAAAATCCCGCACCACGTCGGCTGAAACCGCTGGTCGCGCCCT # Right flank : CGGTCGCCGAAGTAGGGAACAGCCCCGCACGCGCGGGGACCACTTCGAACACGGCACGGCGATGGTCGATGGCCCGGGAACAGCCCCGCACGCGCGGGGACCACATCACGGTCCCGTCCGCAGCCACGAGTCCGAAGGGAACAGCCCCGCACGCGCGGGGACCACCGGTAGCGGTTGCACTCGCGGTCGTGCTGCTGGGGAACAGCCCCGCACGCGCGGGGACCACAGGCACTTCTCCCATGCGCTGGTGTTGTCTTCGGGAACAGCCCCGCACGCGCGGGGACCACCCCCGATCCTGGGGCGGGACCGCATCGTGAACGGGAACAGCCCCGCACGCGCGGGGACCACCGGTCGTGACCAGCGGCTTTGTCAGGCGGGGGAGAGGTTTTTACTTACTTCCTGAGCTTCCGGCATAACGGGCATATGTTTAGGTACTGGCGGCTAATCCGTTCGTGCAGGAGCATGCTGGACGGCTATCGGCGACCATATTTGCGGCGTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 141099-139788 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 141098 30 96.7 31 .............................G CGGGGAGCGGGAGAACGCCGCCGCGATCGCA 141037 30 100.0 31 .............................. GCTCGCCCGCATACGCACGGCCGCAGCCGAG 140976 30 96.7 31 .............................A ACCGTCCCGCGGGCTTCCTCGTTCGACTCCT 140915 30 96.7 31 .............................A GGCCGCCGCCCTGGCCGGGCTGGCGGGTGAC 140854 30 100.0 31 .............................. GGTACCGCACAAACCGGATCGAGGGGAAGGC 140793 30 96.7 31 .............................G CTGGGCCCGTACGAGGGCGGCGACGGTCTCG 140732 30 100.0 31 .............................. GTACCCCCAGGGGCGGCTCGGAGGGCAGGGC 140671 30 96.7 31 .............................G TTTCCGGAAGTACTGGGCGGCAGGCGTGTCC 140610 30 100.0 31 .............................. TGCCGCCGGTGCGGGCGCGCCCTGGCTACCG 140549 30 96.7 31 ........................A..... GCAGGTGCACGACCTCCTGCAACTTGGGGTC 140488 30 96.7 31 .............................G GGAGGGTGATCCACGTATTGAAGGGCTGCCA 140427 30 96.7 31 .............................T CCGCGTCGACCGGGTCGACGGCGTGATCCTG 140366 30 93.3 31 ...............C.............G GGCCGGTCGCCTGCCTGATCAACTCGACGGT 140305 30 96.7 31 .............................T GCACGCTGTCCTACCCGCTGAAGACCGGCAA 140244 30 90.0 31 ...T..........T..............G CCGTCGAGCACGCGCGCGGCGGGAGCATCCG 140183 30 86.7 31 ..............T....A.....A...A TGCTGGCCAGCCTGGACACCCGCCGCACACG 140122 30 96.7 31 .............................G AGCACGGTGCGCTGCGCCATGATTCTCCTGA 140061 30 100.0 31 .............................. GTTGACGGATTACCCGTCGACGGCTGAACCG 140000 30 93.3 31 ...........A.................A CCACGGCGCCCGCCTGCTGGCCAGCCTCGAC 139939 30 100.0 31 .............................. AGGTCCTGGGTCGCGGCGTGGGCGGCCGGGA 139878 30 93.3 31 ..............T..............T CTTCCGAGGGCAGCAGCTCGCCGCCGGCCGC 139817 30 80.0 0 ..............T...A...CA.G...T | ========== ====== ====== ====== ============================== =============================== ================== 22 30 95.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGGTGGGTCATCGGCTCACCTCCGCCTGCGCGGAGAGCACTTTTCGCGACCTGTGGCGCTAGAGGAGCTTTAGCGTTTCGTGATACGCGGATTGGTGGTGCATGGGGGCAATGTGCCGGGCGCCGACGACCGACTCCGGCTCGGTGGCGGTGCTTCCCGGGCGGCGGTCGATCTACTGCGAATGCGGCCCTGGTGCACCGGCTTACCTCCGTTGGCGCGGAGTGCGCGCAGCGGCAGGGAATGACGCGTCGCCCCGGGGTTCTGGCGGAGTGGCTGACGCAGCGTCTGACGGCCCAGGGCGGTGGGCTCGTGCGGCCGGCAGGCTGCTGGGCCGCGAGCTGCCCCGGCGACGGCGCGTGCCTGCTGTCGCCTGCAAGGAGTAACGTGATCGGGTCACCATACTACCGACCTAAATGAAACCCTTCAGGTGGAAATGTCGGAGTTCTCGCAAGTAAGTAAAACCCCGCACCCCGCCGGGTAAAACCACTGGTCGTGCCCT # Right flank : GTTTCGCGCCGTCGCGGTGCGTGTCACTCTTCCGTGTCGGCTCACCCCCGCTCGCGCGGAGATCTCTCTTCGCACCCTGCGGCGTCAGGGGAGGGCTTTGCCGTTTCGTGCTGCGTTTAACTGGGCTTGCGAGGCAATGTACCCGTCACCGGCCTGCTGCGGTGTCCCGTCGTGCGGGCTGCGGGCCCAAGCCGGTGGCGCACGGACTGGCCGGGCGTTTCCCCGCGGGCGGGAGCAGCGTGTCAGCCGCTGCGAGGGGAGCGGCAAGGTGCTGTGTGTGCACCTGCGGGTGTGTACAGTTTGGGTTATGGAGGATGAGACGTATCCGCTGGTGCAGGCGCGTAATGAGCTCGGGCAGTTGGTCAGCCGGGTGCGGCACGGCCGGGCGCACATCGTGATCAGTGAGTACGGCAGGCCGGCCGCGGCGCTGGTGCCGGTGGATGAGCTGGAAGAGCTGCGGCGGCTGCGTGACGAGGCCGACCTCGCCGAGGCCCGGTCCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 142809-142416 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142808 29 89.7 31 ..............C......A......A GGTAGTCCGCGGCATGGTGGGCGGCGTACAG T [142783] 142747 29 93.1 32 .......T......C.............. GTGTACGACTTGCCCACAATGAAAAAGTCGGT 142686 29 96.6 32 ............T................ GGGCCCTTGCCGCTGGAGGCGCCGGACGCCGC 142625 29 93.1 31 ................T...........A TCCACCGGTGGGTGTACGACGTCACCGACTA T [142600] 142564 29 100.0 32 ............................. TCAAGCATGACCCTGCGCAGGGAATTCACCGC 142503 29 96.6 32 ............................G GAGCGCGCCGCCGCCGGCCGCCCGACCGTCGA 142442 27 93.1 0 .......--.................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGTTCCCCGCGCATGCGGGGGTGGCCCC # Left flank : CCCGAAACGAACACGGAGTCCCCATCCGAGTCCGCGAACACACACCACCGCCTCAGAGCACTGAGGGGTAAGGCTGACCTCCGCTCGCACGGAGAGCACACCGTCTCGCTGCCGCGCCGGGTCCACTACGCCGGCTCACCTCCGCTCGCGCAGAGACCGGCACGAACAGGTTCGTCCTCGCCCACCTGGATCGCCTCCGCCTGCGCAGAGAGTACGTCCTGACGAGCCGCCGCCAGCTCACTCCCTTCGGTTAATCTCCGCCTGCAAGCCAACGATGGGTATCAGGTGCTCCGCGGACAAGGCCGTCGGCTTGGGGCTGTGGGGCAGGGCGGCGTACGGCCACCGGGAGATGGGCCTGCCGCTAGGGAAGTTGATTTTGATGCGGGTGGTCAGCGTGGTGTCCGTTCGTGGTGGTTTCGGTGGCACTGGCTGGCGTGCCGTCTCTTCGGCCTTGGCAGCGCAAGCAGGCGCAGGCAGGGCGTGCGGAGAGCCGGGGTCTT # Right flank : ATCAACCTCCTGGTGCACCGCGCACGAATCACCTCCGCTCACGCGAGGAGCGCACCATCGCAACCTGCAGCGTTGGAGGGCTTTGCGTTTCGTGTTGTGGGGGCCGGTGGCGCATGGGGCAATGTACCGATCGTTGGCAGCAGGTGCCGGTGCAGGGCGGGGAGCCCGGGGCGGCGCTCGGCCTCAGCGACGTGCGATTCGCCGATTTGAAGGTGGCTGCGTGACCGCGCACCGATTCACATACCCCGAAGCCGCGAAGGTGCTGCGCGTCGAAGAGCGGTGGCTGCGACGCAACAGCAGCAAGCTGCCGCACAGCCGCAAGGGCAAGGTGGTGACCTTCAGCGAAGACGATCTCGACCGCATTGACGCGATTCACCACCACGAGCCCATGGTGGGCCCACTCGCAACTGGCCCGTCGACTCCACCGTCCAGCACGACTCCGCTGTCAGCGCTCAAACCGCTGCCAGCTCGTCGCCGAACACGCTCGAAGCACGTCGGCT # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 150535-149773 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 150534 30 100.0 31 .............................. CACCGTCCCGAAAGCGGGCCCACACGCCCTT 150473 30 100.0 31 .............................. AGGCCGACGCCACGGGCATCGGGCAGGCCAG 150412 30 100.0 31 .............................. GGAAAATCTGAATCACGGCGCCGAGGATGGC 150351 30 100.0 31 .............................. GGAAAATCTGAATCACGGCGCCGAGGATGGC 150290 30 100.0 31 .............................. ACCGCCTGGTGCCCATCTTCACGCCGCGCGA 150229 30 96.7 31 .............................G CGTCGCCGGGGCTGGTGAAGCCGTCGGGCAG 150168 30 96.7 31 .............................G CCCAGGAGTAGATGGACAGGCCCAGGACGAT 150107 30 93.3 31 ...........A.................G AGAACAGGCACTGGCCGCGCTGCGCGAGTGG 150046 30 93.3 31 ...........A.................G GGTCGTCGGGCCGCGACCGGCCCTGAAGGTC 149985 30 93.3 31 ...........A.................T GGAGATGAAGTACGTCCACTCGTACGACGCC 149924 30 93.3 31 ...........A.................C GGTCCGGGTGGGCGACCAGGGCGGCAAGGCA 149863 30 90.0 31 ...........A...A.............G ACCGCACGGTGGCCGTGGCCCTCCACGGCAT 149802 30 83.3 0 ..............T.......CA.A...T | ========== ====== ====== ====== ============================== =============================== ================== 13 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : GGACGACCATCACTCCATCCGCTCGTTCTGCCACCTCGCGCAAGGCGTGGTCACCGAACCCGACGCCCGTCAGGCCGTGACCGACCTCCTCAACGACATCGAGGCAGAAGCCACCCGCCAGCACCGCACCGACCCATGAGGCTCACCCCCGCTCGCGCGGAGAGCACATGAGCTTGCGGGCCCTCGCCTTGGTCAGCCGCGGGTCACCTCCGCTCGCGCGGAGAGCATGCAGCGGCAGGGAATGACGCGCCGCCGTCGGGGTTCTGGCGGAGTGGCTGACGCAGCGTCTGGCGGTCCAGGGCGGTGGGCTCGTGCGGCCGGCTGGCTCCGCGGCCGCGAGCTGCCCCGGCGACGACGCGTGCCTGCTGTCACCTGCAAGGAGTAACGTGATCGGGACACCGCGCTGCTATCTCGAATGAACCCTTCAGGTGGAAATGTCGGAGTTCTCGCAAGTAAGTAAAAGCCCGCGCCCCGCCGGGTAAAACCACTGGTCGTGCCCT # Right flank : GCTTCGTACAGTCACGGGTGCTCTCCACGCGCGGAGAGCACGCGCCGAGACGGCGTACGTCACTCTTCCGTGTCGGCTCACCTCCGCCTGCACGGAGAGCACCATCGCCCGCCTGCACTGCCGGGCTGCTGGTCCGCCTTCTCGCGCGGAGATCACTACGCGCGACCGTAAAGCCGATGATCGCGGGAAGCACCGGCTCCGGGGCGAAAGTCCGGTCGCACGGGGGTCTTGTTCGCCGATTCGAGGGTTCACTTGGCTCAGCCCTGTTTGGGGCGTCCTTGACTCGGGCCCTCACGCGTTGCCGGCTTTTCGGTCCTGCTGGATTCCGGGGGAGGGGAATGCAGTGTCCTGTATCGACGAGTGTTCCCGTTTGCGCGGGAGCTCGGCTGTAGCGATGAGGTCAAGGCGCTGCTACAAGGTGCGCAGCTGCCTCAGCACCTGGTGCTGGGACAAGTGCCAGGGTCCGGTCCGCCGCATGCTGCGTTCTCCTGAGGCGGCTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : GTGGTCCCCGCACACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 154480-151853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMZE01000001.1 Streptomyces albus subsp. albus strain NRRL F-4371 P384contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 154479 29 96.6 32 ..............C.............. TGGTGGAAGCGCAACCTGGACATCATCTCCAA 154418 29 96.6 32 ..............C.............. TGGCCGGGCACCTGCCCGTGGAAACCTAACGG 154357 29 96.6 32 ..............C.............. TGGTGTTGTGAGCACGTCAAGATGATCGTTTT 154296 29 100.0 32 ............................. CCGCCGGTCCAGCCGACGGCGGCCGGGTGCTC 154235 29 100.0 32 ............................. AAGAAGGGCTCGTGGAACATGTACGCCCGCTC 154174 29 100.0 32 ............................. CACGGGCGAGCGACTTCGTCCCCGGTTTGGCA 154113 29 100.0 32 ............................. GTTGTCGTCGGCACCTACGTGGTGGAGTTCTT 154052 29 100.0 32 ............................. GGTGCGGGCGGCGGTCTGGGCCCGTCGCAACA 153991 28 96.6 32 ........-.................... TGGAGATGCTCAAGTTCGACCCAGCCGTTGCC 153931 29 100.0 32 ............................. TCCTGGCCACGGGCCGGGTGTACCCGTACGAG 153870 29 100.0 32 ............................. GCGCCATCGCCCTGGCCACCACCACCGCGCCC 153809 29 100.0 32 ............................. TGACTCTCACCGCCTTGGAGGAGGCCCGGTGA 153748 29 100.0 32 ............................. ACCTCACCGTCACCGCGGGTTGCGAAGGTCGC 153687 29 100.0 32 ............................. GCCGAGCGCGGCGACTCCCGTACCGGCACTGA 153626 29 96.6 32 ....................A........ TGTGGGAGCAGCCGGAACCTGAGCCTGCCAAG 153565 29 100.0 32 ............................. TTCTACCGCGACCACGGCTACACCACCGCAGC 153504 29 100.0 32 ............................. AAGATCAAGAAGGGGAAGCACACCAAGGCCGA 153443 29 100.0 32 ............................. TGCTCAGCCCGGCGCCCGTGAAGCGCCCCGTG 153382 29 93.1 32 ..............C......A....... GACCCTAAGGGCGCTATGCGCAAGGGACTGGC 153321 29 89.7 32 ...G..........C......A....... GCCACGCCGTACGTCGCCGGTCATGTCGCGCC 153260 29 86.2 32 ...G..........C......AC...... CGTCCGTGGACGCGGCGGCGCCGGCCGGAGGA 153199 29 93.1 32 ..............C......A....... TCGCAGGTCACGCGCGGTTTCCACCCGGAAAC 153138 29 89.7 32 ........T.....C......A....... AGCGGCTACACCAGCACGCTGCAGGGCTACCT 153077 29 89.7 32 ..............C.T....A....... GTAATGATTCGTCCGACGTAGGGGGTTGGACG 153016 29 93.1 32 ..............C......A....... CGCGTCGTAGTCCCCGGCCAGTCCGCCGCCGC 152955 29 100.0 32 ............................. AGCAAGTTCGGCTGCGACGGCACGGGGCGCAA 152894 29 96.6 32 .........................C... ACCGGTACGCGTACCGCACTCACGGACAAGCA 152833 28 96.6 33 .........................-... AGCGTGCTCGGCCGCGAGGACCTGCCGGACTTC 152772 29 93.1 32 ...G.....................C... GTGCGCTGGATGGCCTGGTTGATGGCCTGCCC 152711 29 89.7 32 ..............C......A......T TGCCTCCACAACATCTGGTCCAGCGACTACGT 152650 29 96.6 32 ..............C.............. CACCCCTGGTCCCACTTCGTGGGGTACTCGCC 152589 29 93.1 32 ...G..........C.............. AAGTCGGCGTCGGCCGTCTTCAAGCTCGATAT 152528 29 96.6 32 ...G......................... CCGCCCCCGCGAAGGGCGGTGTGTCCCGAGCG 152467 29 96.6 32 ...G......................... CGAGGAGCTGCGCGAGGCGTACGTGATCGCGA 152406 29 96.6 32 ...G......................... CGCGTGGAGCGGCAGCGGGCCGCGGTCCGGCC 152345 29 96.6 32 ...G......................... CTTCTCCGACTCGATGCCTGGAGACATGGATA 152284 29 96.6 32 ...G......................... AGCGCCTTGATGCTGTCGGCCTTGTCCGCCAG 152223 29 93.1 72 ...G.................A....... ACGCACGGCCGGGTGCAACTCGGCGTCGGCGCGTGGTCCCCGCTCGGAGTCGGGCAGCACCAGCACGCAGTG 152122 29 86.2 32 ...G..........C......A......G ACGCCGTTGCCGTCGCTGCGTCAGCGGGTCGC 152061 29 100.0 32 ............................. CACGCGGCAGGTGGGGTGCCAGCAGCGGTCGC 152000 29 100.0 32 ............................. CGCGGCCCCTCCCCCGTGGTCGAGGCACCGTC 151939 29 86.2 30 ...G.......A..C......A....... GAGCTGATCCGCTGCTTCATGGCGGCGCGC 151880 28 75.9 0 ...G.T..G....G.....A....A-... | ========== ====== ====== ====== ============================= ======================================================================== ================== 43 29 95.5 33 GTGTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CACCGCACAGGCCCCGGCCCCGGCGGAGGAAACGGCCCTTCGAGGCCGGGCCGCCATGTACGCGGCGGGAGCAGCGAAAGTCCGGGCGGCTTTGGCTACCTGAGCCACCGAATATCCGTGTATCGGGGAACTGACGAGCCCGGCCGTGGTCCCGAGCCGGCCGACGGCACTGAGTCCGGCCGACTGTGGTGCCCGCGCAGCGGGGATGGGCTTCAGATGTGGGCCTGTACCGCAGCCGAACGCGCAGTGGTCCCGCGAAGCGGGGCCCGGAGCAATGCCGACGTACGGAGCGGGCCGGATACGGTTCCCGATCCGGCCGGCTGGCTCCCTGGCCGCGGGCTGCCCCGCCGACGACGCGTGCCTGCTGTCGCCTGCAAAGGAGTAGCGTGATCGGGACACCGTACTGCCGTCTCAAAGGAACCCTTCAGGTGGAAATGTCGGAGTCTTCGAAGCTAAGCAAAATCCCGCACCACGCCGAGTGAAACCGCTGGTCGCGCCCT # Right flank : GATCGAGAAGGCCGTATAGCACCTGCCTGGAGGTACGACTCGCGTAGCCTGTGGCGGCTCACCTCTGCTCGCGCGGAGAGCACCCTTCGCGACCTGCGACGTTAGAAGGACTTTGCCGTTTCGTGATGTGCGGACCGCTGTCGCATGAGGGCAATCTACCCCCTTCGAGGAGGACGTCGGTGCTGGCCACGACCCGGCGGTCCGGCGCGGGCGAGGGATGGCGCGTCCGAGCGCAGTCTGCTGTCTGGGAGCGCCGACGAGTCCGGGCTGCCCTGGTACGGCGTCGCGCTGTGGCGTAGTGGTCGCCGTCACGGCAGCGAACGTGGCGGGCTTGGACTGTTTCTGTTCTTCGTGTGGCGTGGGCGTGGAAGAGTGGGATGTGCGTTGGGGGAGGGGATTGTGAAGCCGGAGGTGTGGGTCGCCGGTTTCTCGGCGGCTGTGGCGTTGGGGGCGTCTGCCATGTCGGTCTGGGCCACCCGTGGGGTCAGCAGTAAGGAGAG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //