Array 1 62452-60945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHU01000010.1 Serratia marcescens strain 420_SMAR 287_157837_2555692_108+,...,161+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62451 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 62391 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 62331 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 62271 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 62211 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 62151 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 62091 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 62031 28 100.0 12 ............................ CACATCGCCCGC Deletion [61992] 61991 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 61931 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 61871 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 61811 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 61751 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 61691 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 61631 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 61571 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 61511 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 61451 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 61391 28 100.0 32 ............................ GTTATATGAGAGGTTTCCGCCGATTGTTACGC 61331 28 100.0 32 ............................ CACGAATCAGGAAAATGCACGATTGCACCGGC 61271 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 61211 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 61151 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 61091 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 61031 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 60971 27 85.7 0 .............C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GATGCGCTGACGGCGCTGGGGGAATTCGACTGGCTCAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 72266-71275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHU01000010.1 Serratia marcescens strain 420_SMAR 287_157837_2555692_108+,...,161+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 72265 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 72205 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 72145 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 72085 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 72025 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 71965 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 71905 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 71845 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 71785 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 71725 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 71665 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 71605 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 71545 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 71485 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 71425 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 71365 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 71305 28 96.4 0 ....................A....... | G,A,A [71278,71282,71284] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //