Array 1 995-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSE01000021.1 Salmonella enterica strain CVM 43813 43813_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 994 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 933 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 872 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 811 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 750 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 689 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 628 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 567 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 506 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 445 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 384 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 323 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 262 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 201 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 140 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GACCGTTATCTGCTGGTTGATACTTCCCCGAGCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 218466-217764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSE01000010.1 Salmonella enterica strain CVM 43813 43813_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218465 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 218403 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 218342 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218281 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218220 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218159 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218098 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 218037 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 217976 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 217915 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 217854 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 217793 29 96.6 0 ............T................ | A [217766] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 445-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSE01000041.1 Salmonella enterica strain CVM 43813 43813_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 444 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 383 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 322 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 261 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 200 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 139 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //