Array 1 326420-321944 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYZK01000002.1 Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 strain DSM 22698 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 326419 28 100.0 33 ............................ CCGACGTGACAGCCGACTTGGTGAGGTCAACCC 326358 28 100.0 33 ............................ CCTAAGCGCTACGCGTTGGGCAACCGGGCAAGG 326297 28 100.0 33 ............................ CTACCACATTCAACCTCTGTCTTGGTTCGTGTG 326236 28 100.0 33 ............................ TTTTGCAAAGTGCCAACAAGCAGTATGTTTCCG 326175 28 100.0 33 ............................ CCAACCAGTGACACACGTCCACCGGCATAGTCA 326114 28 100.0 33 ............................ TCGAAATGGCCCCGAGCACCAATCCCTTTTTGT 326053 28 100.0 33 ............................ TGGACGACTGTTGGTCGCCTTGGCCATTTAAAA 325992 28 100.0 33 ............................ TTTTGGTGATGGTCGCTGCCAGACCGGTGATGT 325931 28 100.0 33 ............................ TTTAGAGAAGCACGAGCTAGTCAACTATTTGAT 325870 28 100.0 33 ............................ CCCCAAAGGGGATGGCCAGTATCAGCACGCTAA 325809 28 100.0 33 ............................ TATAACACCCTACCGACCAGCAGACAACACTTT 325748 28 100.0 33 ............................ TTTACATGTTCCCCGCATAAGCCGGGTTTTTGT 325687 28 100.0 33 ............................ TCAAGGCCCTACAGGCACAGGTCAAAAGTCTGG 325626 28 100.0 33 ............................ TGCTGATTATTGGATTAAGTTGTACAGCGCCGG 325565 28 100.0 33 ............................ TTAAGCCTCGTTATCAATTAAATCTTGCGTGAA 325504 28 100.0 33 ............................ TACAGCCCTTACGAGCGGAAGATGGAAATGGCG 325443 28 100.0 33 ............................ CAACGTCCAGAAAACGGCCGACGGTGACCTTCT 325382 28 100.0 33 ............................ TTAAATCTTGCGTAAACGGGTCGTCATTGCCAT 325321 28 100.0 33 ............................ TGCCCAATCCTTTGCCAAGAAAAGAGATTTTAT 325260 28 100.0 33 ............................ CCCCAAAGGGGATGGCCAGTATCAGCACGCTAA 325199 28 100.0 33 ............................ TATAACACCCTACCGACCAGCAGACAACACTTT 325138 28 100.0 33 ............................ TTTACATGTTCCCCGCATAAGCCGGGTTTTTGT 325077 28 100.0 33 ............................ TCAAGGCCCTACAGGCACAGGTCAAAAGTCTGG 325016 28 100.0 33 ............................ TGCTGATTATTGGATTAAGTTGTACAGCGCCGG 324955 28 100.0 33 ............................ TGTGCCGGGTCGCCTTGGTGACCGTCACCATCT 324894 28 100.0 33 ............................ CAGGTCATAAAAGTACCCCACGAGGTCGCCCAT 324833 28 100.0 33 ............................ TGATGCTAGGTGGTGCCCATGGTGGATTTAGTG 324772 28 100.0 33 ............................ TTAAGCCTCGTTATCAATTAAATCTTGCGTGAA 324711 28 100.0 33 ............................ CGCTCGTCCGGCTAAGTCCAGCGAACTCCACCG 324650 28 100.0 33 ............................ CCGCTCAAACACAGCTAAAAGCAGTCGAGTGGA 324589 28 100.0 33 ............................ TACCAGTAGTGAATATCGTTGTCGCCGCTGTAA 324528 28 100.0 33 ............................ CGACCGTGTTACGCTCATCGGCCATGCCAAACT 324467 28 100.0 33 ............................ CATTACCGCACACAACGGGCTGAACTTGCGGAT 324406 28 100.0 33 ............................ TTTGCTAAATGGTTCTTGGCCGTGGCAGTGGTT 324345 28 100.0 33 ............................ CTGAAACCGAAGTCACCCTAGCAAGTATTACGG 324284 28 100.0 33 ............................ CTACGTACTCAACGCCATCTACTAATACAAGTT 324223 28 100.0 30 ............................ TCGGTCATGTTATACACCGCCTTTCAGCAA 324165 28 100.0 32 ............................ ACCCCAGCGCTTTTGTTCACGTGAAGGTCGAT 324105 28 100.0 33 ............................ TGTTATATGCACTGGCCGCGTCGTCCCGCGCCT 324044 28 100.0 33 ............................ CGAAGCACTCGGATCGTTTAAGTAGAAATCGGA 323983 28 100.0 33 ............................ TGTCTGGTAAATACATTAAGGACAAACGTCCCA 323922 28 100.0 33 ............................ CGACGACAGCATCGACTTGGACGAACACCCAGA 323861 28 100.0 33 ............................ CTAACGGAGACGCAGAAGACGTACGCCATCAAG 323800 28 100.0 33 ............................ TTGTTGTGCCCAATAATCTTAAAGCTGTGCTCA 323739 28 100.0 33 ............................ CACTGAACGCGGCTTTGAAAAGCATGTTTGGTA 323678 28 100.0 33 ............................ CGACGAACGCCCACGAACCGAAATGCCGTTAAA 323617 28 100.0 33 ............................ TGGCGATTTTGACGTCGTGTGCAGCTCGCTGTA 323556 28 100.0 33 ............................ CTGCGTCAATGCAGTGGTTGTAACTGTCGACTG 323495 28 100.0 33 ............................ CACCGGCTGGCCCTGAGCCTCATCAACAATATT 323434 28 100.0 33 ............................ ACAGATCATCGTCTTCGGTGTCGTCTTCCCAGT 323373 28 100.0 33 ............................ TTACTTTTGCTATAAGCTAAATGCCCAAAGAGA 323312 28 100.0 33 ............................ TAGATAACTACAAATTAAGTAAAGCCCAAACTG 323251 28 100.0 33 ............................ CAAAGATTTGGACGACGAGGCGGAATTACGTTC 323190 28 100.0 33 ............................ TACAGCCCTTACGAGCGGAAGATGGAAATGGCG 323129 28 100.0 33 ............................ CAACGTCCAGAAAACGGCCGACGGTGACCGTCT 323068 28 100.0 33 ............................ CGACGAGGCCCGGGAAGCAATCTAAGCACGACA 323007 28 100.0 33 ............................ TCAACGTTTTGCCCTTTTTGTTTTACTCTCGAT 322946 28 100.0 33 ............................ TGTGGTTTTTGTACATGCTGGCAATGGCGTATT 322885 28 100.0 33 ............................ CGCGAGTCACGTGAACAGGATATTCGCGATGGA 322824 28 100.0 33 ............................ CCCAGGGTAGTAATCTAGTGAACGCGTATCCCA 322763 28 96.4 33 .....................T...... CTTCTTGCAGATAAGGCATTCCGTGGTCTACCC 322702 28 100.0 33 ............................ TCAGATTCATTTTTATATGGACGACCAACCACG 322641 28 100.0 33 ............................ TGGCAAACTGTGCTTCAACCATCAGGTGAGCAC 322580 28 100.0 33 ............................ TAGTGTTGTTGGTGTTGCCCAACGTCACCGCGT 322519 28 100.0 33 ............................ TAAAAATCCAGCTCCATTAATAGCACCAAAACT 322458 28 100.0 33 ............................ TTAAATCTTGCGTAAACGGGTCGTCATTGCCAT 322397 28 100.0 33 ............................ TGCCCAATCCTTTGCCAAGAAAAGAGGTGTTAT 322336 28 100.0 33 ............................ TATATATTGATTAGTAATGTCTTTAATTAAATC 322275 28 100.0 33 ............................ CGCCTATAAATTTAAAGGTCACAACAACATCTA 322214 28 100.0 33 ............................ TCATTCGTGAAAGTAATATTCAAGAAAACGTTG 322153 28 100.0 33 ............................ TCTAAATAGTACGGTGCAGAGTTTTATTAATCC 322092 28 100.0 33 ............................ CTCTTTTTCGTGCTTGCCATTGTACACGTAGAG 322031 28 100.0 33 ............................ TGGCATGGTAGTTGCTGGTAAGGATGCTTTAGT 321970 27 92.9 0 ..............A-............ | ========== ====== ====== ====== ============================ ================================= ================== 74 28 99.9 33 GTGTTCCCCGCAGGTGCGGGGGTAATCC # Left flank : AGTGATGACCAGATTATCTCGATTGGTGCGCTTAAGAGTGATGGGCAAAATGAAACTGGTGCGTTTAAATGTCTCATTAACGTTAACCGTGGAATTCCCGAAGGCATCTCACGGTTAACGGGAATAACCAGTGCAGACTTGATAACGCAAGGTGTTCCGTTAGCTGAAGCGATGACCGGCTTACGTGAGTTTGTTAGCAATTGGCCCATTGTGGGCTACAACGTTAATTTTGATGACGGGTTTCTCTTGGCTGCTGCTCACGATGTGGACCAGCCCGCGATTAAAAATCGGATGATTGATCTTTTACCGCTAGTTAAAAAGGCTAATAGGTTCATGGATAATTATCGTCTCAGTACGGTGCTGGAGACTTATCAAATTACAAACGAGCACCCGCATAATTCAACGTCAGATGCGCGGGCAACTTTGCAGTTGGCATTGCAACTCATAAAAAAAGGTGTAAGCGTCTTTTGAAAAGGCTGAGACTATGGGATTTATTTACT # Right flank : TGCGCTTTTGCAGCTTTTTGACAACTCCATCCGCCGTACTAGTGGATTGGGACTCATCAGCTTCGGTCTGTGCACCGGCCTTAGTCGCGTCATCGGTATGTTCATCAGCTTCGGTAGATTCAGTTGTCCCTGTTTGTGCTTCTGTGTCTGTCTCGTTGTCCATTTTGTGGGCCTCCTCGAATATGCAGTCATGGGAGACCAGTCTCACGCCGTTCTTTAGCGTCCGCGGCATAGGTTGAATGGCATAGAAAAAGCCCCAGTCTTAAGACTGAGGGTCAAAGAATTTAATGTTTATAATTTAGGGGATAATTTTGCTCCATTCCTCTGCTGTAAGCTCAGGAATTGGGGTGTTAGAGTCGATTGCTTCATTTACATCACGAGTCATGTCCTTAACGCCCTGTTCTAGCTCGTCCGGATGTTGCTCAATGTGCAATGGATCCCACCAGCCAATAATTCGTTCCGGAAATGGCGCACCAAAGTGGTCCTCGTAAGCCCGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGTGCGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //