Array 1 940067-937971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEW010000005.1 Bifidobacterium pseudocatenulatum strain YIT12187 YIT12187_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 940066 29 96.6 33 ............................T ACGGGTCTGCGGAAATTCCGAATTAAAGGTCAT 940004 29 100.0 32 ............................. ACCAATGGACATGCGGGACGGATACAATCATG 939943 29 100.0 32 ............................. TCGCGTTGAGCATTTCACCCGTATCGATCGGC 939882 29 100.0 32 ............................. TACCTAGGCATTGACAATAGCACCACGGAAAA 939821 29 100.0 32 ............................. GCCACTTCCCCCCAGTTTCAGGTGCGCATTCC 939760 29 100.0 32 ............................. GAGCGGAAAAACCCTTTGCTTTGCCGGAATTT 939699 29 100.0 32 ............................. TACTCGACGGCGAATGAGACCATCCCAGAAGC 939638 29 100.0 32 ............................. GGACGTACAATTCGTGCAACTTCCAATACGTA 939577 29 100.0 32 ............................. ATTCCGGTGATGTCCGCGCTATCGTAGGCGTA 939516 29 100.0 32 ............................. CTCGAACACCTCATGCTGCCCGAACCAGTCGT 939455 29 100.0 32 ............................. AGCCGTGCGCCGTGGAGTAGGCGGATCTCGGG 939394 29 100.0 32 ............................. GAGTCAAGCAAATCGGGATTGGTCACATAAAT 939333 29 100.0 32 ............................. CGGCCGGTCGGAACCACATGCACCAGCTCTCC 939272 29 100.0 32 ............................. TGGGTAGGCAAAGGCCTGTTCTGCATCGATTG 939211 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 939150 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 939089 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 939028 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 938967 29 100.0 26 ............................. ACAAAAGAACACACACAACAGAACAG 938912 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 938851 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 938790 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 938729 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 938668 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 938607 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCAG 938546 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 938485 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 938424 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 938363 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 938302 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 938241 28 96.6 32 ....................-........ AAGGATACGCTGCCCATGATCGTCGGCACGAA 938181 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 937999 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 33 29 99.2 36 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAATGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //