Array 1 71941-74534 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOB01000002.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45792 45792_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71941 29 96.6 32 ............................G TTTACCGCCGGTATTCGTGCAACGATTGCCGC 72002 29 96.6 32 ............................G CTGGCTTTGCTCAGCTTCAGTGGGGCAAGGGG 72063 29 96.6 32 ............................G GTGAATCTGATCGGCACTGTGACGGCCCCGTA 72124 29 100.0 32 ............................. ACTCTTCTTACATTGTCGGGGCATCAGTGCTG 72185 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 72246 29 100.0 32 ............................. CGCGGCGAACACTCATTACCGCGTGGGCCTTT 72307 29 96.6 32 ............................T GTCAAGCGTGCGGTCTGAATTTCAGCCATCTT 72368 29 100.0 32 ............................. ACCACAGGTGGGACACGGCGCAGGCTCACGGA 72429 29 96.6 32 ............................G GCGATGGAGGAGTGCTGGGAGTTGAGGTCGAA 72490 29 100.0 32 ............................. CGACCTCCAGCGAAACTCTTGGGATGCCACAT 72551 29 100.0 32 ............................. GCTTTTAAGGGGAGCGTTGACCAGCTGTGTGA 72612 29 96.6 32 ............................G CAGGCTATCGCGGCGAACTCGACTGCGAATGC 72673 29 100.0 32 ............................. CAACTGACCGCCACCAAAAAATGCGACACTCC 72734 29 100.0 32 ............................. CCTGTGGGGTCGCCCGCTGAAACGTACCCGGG 72795 29 100.0 32 ............................. GGCATGGGAACTGCGATCTTCGGTGATGACCA 72856 29 100.0 32 ............................. CGCTGATACCACTCACGCTCCAAAGGCCCCAT 72917 29 100.0 32 ............................. GTCGGCGAGGGCACCAGATACCAATGTCAAGC 72978 29 100.0 32 ............................. CCGATCTTCGCGGCAGCCGCCCCACATATTTT 73039 29 100.0 32 ............................. GGTTTGCCGATTAGGACGCGTAGCTTGGGTCG 73100 29 96.6 32 ............................G TTGTCGAAGCGCGCCTCCGATGGTGTGCAGGC 73161 29 100.0 32 ............................. TCCGCCAGATAGTCAGTGTGGTTGGCGATGAC 73222 29 96.6 32 ............................T CATGGGTGTTTCAAGATCAACGGTTAACCGAA 73283 29 100.0 32 ............................. CTCACCCACCTGCACAAAGTCGCCTAGATTTA 73344 29 96.6 32 ............................T TGTTCAATTTCGCGGCGGTCAAACAGGTTTGC 73405 29 96.6 32 ............................G CTTGAAAAGATAAATCGAAAAATAATGGACCT 73466 29 96.6 32 ............................G GAGATCATTGATCTGTGCTTCCAGTGCGACGA 73527 29 100.0 32 ............................. AAGCAACTATCCGACCTGTGGGGGCTACAAGG 73588 29 96.6 32 ............................G TCTTCATATGGATCGGGGCGGTGTTCCTCTGG 73649 29 96.6 32 ............................T CACCGCCTTTTCTGGGTCGAAGCTGTAGGAAT 73710 29 100.0 33 ............................. CCCCCTCATGTAGAAAAGGGATTCGTCGATTTT 73772 29 100.0 32 ............................. CTGCAAGAAAACAGAGAAGGCGTTCATCTCCA 73833 29 96.6 32 ............................G TCCACCTCTTGCACCAGCGCCTCCCTGACGAT 73894 29 96.6 32 ............................G GACACGGGCAACGGTGGTGGTTTCAAAAAGGG 73955 29 100.0 32 ............................. ATCCTCATGGATCAGGCTAGTCATTGGGTTCT 74016 29 100.0 32 ............................. CTGGACGCGCATGGCCCTGAACCTCGCCATCG 74077 29 96.6 32 ............................G TCCAGGGCTTGAGTGCGTGCGTCTTTCATCGC 74138 29 100.0 32 ............................. CCCCTCATGTAGAAAAGGGATTCGTCGATTTT 74199 29 100.0 32 ............................. GCCGCAGTAATTACCGCACAAATCGCCGACAC 74260 29 96.6 32 ............................G CACCAGTAGGAAGTATTGTGTGCAAGCGGACA 74321 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 74383 29 96.6 32 ............................G TTCGGGATAGTGACATCGCCGACAACATGCGC 74444 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 74506 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.4 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 91491-92864 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOB01000012.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45792 45792_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 91491 29 100.0 32 ............................. ATTTCCCATGCCGGTTCTTCGCCGGCGTCGTA 91552 29 100.0 32 ............................. TCCACCGAGTGCTTTTCATGCTGGTCAAACCA 91613 29 100.0 32 ............................. GTGTGGATGGTTCCGCACGTGTCAAGTCCGCG 91674 29 100.0 32 ............................. TGTCCCGTTGAAGTTGGTGAGTTGCCTGCGGA 91735 29 100.0 32 ............................. TGGCGCAATCTAGGAACCGCAATCGAACGGGC 91796 29 100.0 33 ............................. TTTGTAAGGACGCGTACTCGCTTTCCACGAAAG 91858 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 91920 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 91981 29 100.0 32 ............................. TGAAGCAGTCGCAGAATGGGGGGAAGAGCTAC 92042 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 92103 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 92165 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 92226 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 92287 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 92348 29 100.0 32 ............................. AAAGGGCGCTATCACACCTTCTATGGTGACGC 92409 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 92470 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 92531 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 92592 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 92653 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 92714 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 92775 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 92836 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //