Array 1 195911-197461 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNE01000001.1 Cronobacter malonaticus strain cro530C3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195911 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 195972 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 196033 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 196094 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 196155 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 196216 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 196277 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 196338 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 196399 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 196460 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 196521 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 196582 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 196643 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 196704 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 196765 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 196826 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 196887 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 196948 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 197008 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 197069 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 197130 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 197191 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 197252 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 197313 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 197374 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 197435 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 224117-225183 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNE01000001.1 Cronobacter malonaticus strain cro530C3 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 224117 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 224178 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 224239 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 224300 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 224361 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 224422 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 224483 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 224544 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 224605 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 224667 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 224728 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 224789 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 224850 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 224911 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 224972 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 225033 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 225094 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 225155 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //