Array 1 180852-182099 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFQ01000018.1 Klebsiella quasipneumoniae strain O31P O31P_BDMS190049508-1a_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180852 28 100.0 33 ............................ TTCCAGTCGCTTCCAGTACCCGGAATTATCCGA 180913 28 100.0 33 ............................ TCTTTATATCGGCCTGTGAGGCGATCAGGGTCA 180974 28 100.0 33 ............................ TCCACATCTCGCTGTCAGAGTGATCCTGCATCG 181035 28 100.0 33 ............................ TCAGGCAGCAGGTGGAAAGTCCACGGCAGGTCG 181096 28 100.0 33 ............................ TGAAGACGAAGGTGTATTTCAGGAGCCAGTAAT 181157 28 100.0 33 ............................ TATCAGCTGTTTAGATTGCGGCTTATGCGATGG 181218 28 100.0 33 ............................ CTCATGGCCCTCCGACGTATTCAGGTAGTCAGC 181279 28 100.0 33 ............................ TACTACCCATCGCCGGAAGAAATTTAGCAATAT 181340 28 100.0 33 ............................ CTTTGGTATCTGGGGCATTATCTCCACGGCTGG 181401 28 100.0 33 ............................ CAAGTTTTTGCAGGCTACGCAGATTTTGAGCTG 181462 28 96.4 33 ......................G..... TATCTACAGCTTCGTGCTGCCATTTTTCGGCGT 181523 28 100.0 33 ............................ CCCATCAATGCCGAGGGGCGTCATAATGACGTA 181584 28 100.0 33 ............................ CTGATCGCCAGCGTCATGAGGAATTCCGGACTG 181645 28 100.0 33 ............................ TCCATTACCGATTAGCGCTGCAAGCTGCGTTGG 181706 28 100.0 33 ............................ CCGTTTACGCATCTCTCACGTTATAGTGCTGCG 181767 28 100.0 33 ............................ TTGGGGGTAAGTTTCGCTCAGGTAGAAGTTGAG 181828 28 100.0 33 ............................ CGTAGCAGCAGTCCTTACCCTCAGCCGGGCGCA 181889 28 100.0 33 ............................ CGTCTGACGGTCTTTCGGAGGGAGATTTTCAAG 181950 28 100.0 33 ............................ TCAGCCGGGCTATCCGTTCCAGCGGTCCGCCGA 182011 28 100.0 33 ............................ CAGGGTGCTGTCCTCGTCCTCGATATCACCGGC 182072 28 92.9 0 ...........T.........T...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCGGCGCAGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACCGCGCTGCGCGATGCCGAACACTGTCATCTGACGCTCCCGGCGGAGGATGTGTGGGTTTTTCCGCAGCGGTAACCACGCGAAGCCACGGAAGGCAAGCGTCAGGACATAACGCTACGCTATGGGATGACAAAAGCGCTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATATGGGGACATACTTTTTCGCTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : CTCGTGACCGCTTATCTGACGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTCCACTTATAAATATTCGTGAGCTATGTTTGTTTTATGCTTACTAAAATGACGTATAAAGCGTTAGGCTTTCTTACTCATCTGGAGATATTGCTCTCCCTATTAATTATTTTTAACTTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTATTTTTGATTTTGTAAAAAGTTATTTATAAATTCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTTCAAAATCAACATGCCATCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTAAGCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190808-191875 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFQ01000018.1 Klebsiella quasipneumoniae strain O31P O31P_BDMS190049508-1a_1.clean_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 190808 28 100.0 33 ............................ TATGGTGTTTTCTTACTGCGTGATCTGGTTGTT 190869 28 100.0 33 ............................ CCAGATTTTTCATATTTGCATATGCAGCTACCG 190930 28 96.4 33 .C.......................... CTTGTGCTTATTGGTATAAGCATCTCCGCATTC 190991 28 100.0 34 ............................ CATGATGCGCGCATACCAGACCGGGTATCAGAAG 191053 28 100.0 33 ............................ TACGTTTTGATGCAAAGGCTATGCGCAGCATTC 191114 28 100.0 33 ............................ TTGGTCTCTTCGTTCATTAGTGGTACCTCAGAA 191175 28 96.4 33 ..........T................. TACAACGCGCACCCTTGACGGGTGGATTTGTGG 191236 28 100.0 33 ............................ CCGTATGACATGCGCCGCGTTACCTTCACAGGG 191297 28 96.4 33 .......T.................... CTCAGGGTGTTAGCGGGTTACTTCCCATCCTTG 191358 28 96.4 33 ..........T................. CGGTTGGCTGCTGGCGTACCATATCCAGAACCT 191419 28 100.0 33 ............................ CAAGCCAGACAACGGCCCAGTAATGGAAGCATT 191480 28 100.0 33 ............................ TATCGACGAGAAAATTAAGTGGCTGATTGACAA 191541 28 96.4 33 ..........T................. TGGTTGAGAGCCAGAATCTCTACATCGACGATA 191602 28 96.4 33 ..................A......... TACTGTTTGCTATTCCGGTGGCACACCGATTCC 191663 28 100.0 33 ............................ CGAGATTTGCTACGACTCAGGCACGCCTGTAGC 191724 28 100.0 33 ............................ CGCCAAAATGGTTTATGAAGTTTATGGCCGCTG 191785 28 100.0 33 ............................ CATGGGCATCTATAAAGCGCTGGGAGCAGAAGC 191846 28 89.3 0 ............TCT............. | C,C [191868,191871] ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTATAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCCCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGATGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTTCGTGGGCGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCTGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGGTCAGTGGGTTACAACTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAATTGACGTTCTTTGACAATATGTTGGT # Right flank : CGCTCGGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTAACTGGCGTGGTAGTTTGGCCGTAGCCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTTTCCGTACTTTGATAGAGGCATAGAGAGACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGCTCGGTTCGCCTTCGCCGACCAGCGTTACGCCAAGCGGGGCAAGGGCTTGTAAAAAGAATGCTTTGCTCGCGGCATAATCACTGACGCCGAATTTCACATGATCGAACATATCTTCTCTTCTCCTGTGGACGGGATATCGCCAGCTGAACGGTTTAGCCGGAAAATAGAGGTGAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //