Array 1 12266-12413 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABL01000053.1 Pectobacterium parmentieri strain NY1532B NODE_53_length_22220_cov_17.3225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12266 28 100.0 32 ............................ CTGTGGGGATGATAAAGAACGACTGGCACCGC 12326 28 100.0 32 ............................ TGGGCGTTTTCGCCAGATACTTTACTGAGGAA 12386 28 78.6 0 ....................TGA.CT.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCTAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : TCAGGTTTAAATTTCTTTCCTTCCTTGATATTTCTAAGCTGCCTGTACGGCAGTGAACTGTAGCCCGATCACTCTAACGATTTGTTTTATTAGCAGCAATCACCGTTTTTGCCGCAAAAACCCTTTTTTTCAGCCTAACTGTAACTCATTGATTTTTAATCCTGTGAAATAGACCAAATAAAAAGGGTCTGCATCTGGGTAATATTTTTTGTAGCCATCATTTTCCCAAGATATCTGTGATAGGCTGATTTTCGTTAGTTTTCTGAAGATTATATTTTATTTATTAAATAGTTAGTCTGCGATTAATTTCGCTGGCATCAACACCTATTATCGATCGCGGCAGAAAATACATTATGGATAACGCTTTTAGCCCTTCGGACTTAAAAACAATTCTGCATTCCAAACGTGCCAATGTTTATTATCTTCAGCATTGTCGCATTCTCGTCAACGGTGGCCGTGTCGAATATGTCACGGAAGAGGGAAGTCAGTCGCTGTACTGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5304-5510 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABL01000003.1 Pectobacterium parmentieri strain NY1532B NODE_3_length_204023_cov_16.7956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5304 28 85.7 32 C.AAG....................... GAAATACGGGGCGAGGAATTTAGCTGTTATAT 5364 28 100.0 31 ............................ GCGCCGAACGGGAAGAGCTTGAAAAGCGTGT 5423 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 5483 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGACTTTTAACAGATAATCGGCATCACCCGTGGTTTTATAGGCATCGATAATCGCATCCACTTCCCCTAGCATCTGGTGAAAGCGTTCAACGTATTCGCTGGTGTGGTTGATCAGCCGCACCTCAATTAACCCCAGACATTCCAGACCAACGGCATTCGGTGACAGTCGGGCATGATAGCCGAGGATCAGTTGTGCCTGTTCCAGCGCGATGCGGCGGCGGGAGCACTGTGAGGCGGAAAGCCCGACCAACTCACTCAGTTCCTGATTGGTCAGGCGGCCATTGGTTTGCAGCAGCGTCAGAATTTTCAGATCGAAATCATCAATGTTGTACATCGCGTTCCCTAAACAGTGTCAGATAGTCAATCTAACAGACTACCAGCTTTTTAAGCCGCGTTGCCTATGAGTTTTTTATCGCTGATTTCCGAAACGTTTTGTTCTTTAAGCTGCCTGCACGGCAGTGAATGCTGGCTCGATGCGCAGCATGACAGCGCGCCCTTT # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCATCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36711-38571 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABL01000025.1 Pectobacterium parmentieri strain NY1532B NODE_25_length_69762_cov_17.3501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36711 29 100.0 32 ............................. CTAAGTGAATGTAGAGTCGATACCGAAATACT 36772 29 100.0 32 ............................. CTCTTCGAACGTGTAATGCTCGTCCTCGCATG 36833 29 100.0 32 ............................. ATGATTTTGTTTGAAATCATCAACAACCGATA 36894 29 100.0 32 ............................. GCGGACGTAGATTATCACGGAGTTGTGGTGGA 36955 29 100.0 32 ............................. TTAACTTTCAGATAGTTTCCGTATATCTGCTC 37016 29 100.0 32 ............................. CGCATCATTTTCATCACTGCTACCGCCAATCA 37077 29 100.0 32 ............................. ACTATGTGACTTTGTCGCTAGCCTTTGTCCGT 37138 29 100.0 32 ............................. AAACCGGATTAAACACTATTGAAAATATGTCC 37199 29 100.0 32 ............................. AGTCGTTAGATGTAGTAACAAAAGTGCTAGAA 37260 29 100.0 32 ............................. CCAGATTTGCCGATATTATATGCGAATGTAAT 37321 29 100.0 32 ............................. CAAAGGGTTTCATTTTCATTTACTCCATTACT 37382 29 100.0 32 ............................. GGAGCGTAGCTGACACACCCGCAACAGATTTA 37443 29 100.0 32 ............................. CTGATAGAGAGTATGGACTACAAGTTAAAGCC 37504 29 100.0 32 ............................. TCGCCTACCATATCGTCGCCAGATGAATAGTA 37565 29 100.0 32 ............................. CGTGGCGTTACTCGTCAACGATTGGAATTTGC 37626 29 100.0 32 ............................. TACAATATGAAACACGTGGCACTATTCCTGAA 37687 29 100.0 32 ............................. ATACCGCATATGCTCAATTGCAATCACAAAAC 37748 29 100.0 32 ............................. CCGACAATTGGGCTACAGTTGTTTGCGCCTCC 37809 29 100.0 32 ............................. CGCAGGAACCAGTGCCGGAGACTGGACAGCAA 37870 29 100.0 32 ............................. GACTGAACACCATGACTGATTTATTGAGCAAA 37931 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 37992 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 38053 29 100.0 32 ............................. AATGGTGAAAGACTCCCCCCGCCTGGACATAT 38114 29 100.0 32 ............................. GCTGGAATAGAAACGAATGGCAGTTTTACCGT 38175 29 100.0 32 ............................. ACATCACTGTAGTCGGAGATATTCTCTCATCA 38236 29 100.0 32 ............................. TACATCGTCGGTGGAAATTCGCATAGTTTCAA 38297 29 100.0 32 ............................. GAGTTTCATGCTGCTTCCTCCCGCTGGTATTT 38358 29 100.0 33 ............................. TATTAAATCAGCGGCGGCTACTGCTGTTCGAGG 38420 29 89.7 33 T.TA......................... TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 38482 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 38543 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATACTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAACGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40441-41079 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABL01000025.1 Pectobacterium parmentieri strain NY1532B NODE_25_length_69762_cov_17.3501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40441 29 100.0 32 ............................. CGTGGTAGCGGTGCTTCTTGGCCATCCAAGAA 40502 29 96.6 32 ............................T CCCGGCTGCACGTGTTTTCCTGGCAAAGCACC 40563 29 100.0 32 ............................. AAATATGTCCTAGCTACTATAAAAATGAATGA 40624 29 96.6 32 ............................A GAGACCTGAAAATAAATGTCATACGTAAAGAC 40685 29 96.6 32 ............................A AGTTCACGGGGCGAGCTGGCTTGCTGTACGCC 40746 29 100.0 32 ............................. GCGAGTAATGGCATTGATTCAGCGGTGTCATT 40807 29 100.0 32 ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 40868 29 100.0 32 ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 40929 29 100.0 32 ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 40990 29 100.0 32 ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 41051 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //