Array 1 5417-6419 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBP01000100.1 Salmonella enterica subsp. enterica serovar Newport strain LBMM 896 NODE_100_length_13561_cov_15.8422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5417 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5478 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 5539 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 5600 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 5661 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 5722 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 5783 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 5844 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 5905 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 5966 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 6027 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 6088 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6149 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6210 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6271 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6332 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6392 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33985-32186 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBP01000038.1 Salmonella enterica subsp. enterica serovar Newport strain LBMM 896 NODE_38_length_43286_cov_17.2772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33984 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 33923 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 33862 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 33801 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 33740 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 33679 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 33618 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 33557 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 33496 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 33435 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 33374 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 33313 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 33252 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 33191 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 33130 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 33069 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 33008 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 32947 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 32886 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 32825 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 32764 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 32703 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 32642 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 32581 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 32520 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 32459 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 32398 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 32337 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 32276 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 32215 29 100.0 0 ............................. | A [32188] ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //