Array 1 21586-21835 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIS01000049.1 Leptospira kirschneri serovar Grippotyphosa strain UCR5RB1 Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 21586 37 97.3 33 ....T................................ AGTATTCACAAAATCAGAAAATGGCGACTCAAC 21656 37 97.3 34 ................G.................... CTCTGGATACATTGCAGATTCGTCCAACGCCATA 21727 37 100.0 35 ..................................... TGTAACCATAACTCTGCTCCTCAGTCCCAACCCGA 21799 36 86.5 0 ...........................T.-.CA...A | G [21824] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 95.3 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGCGAATAGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 85249-85427 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIS01000009.1 Leptospira kirschneri serovar Grippotyphosa strain UCR5RB1 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 85249 36 100.0 37 .................................... CCTCAGTTACAAACTCTAAATCTTTCCGAAAAATTTG 85322 36 97.2 34 ...................T................ CAATCGGATCAACATATTTGTAAATTACGACAAC 85392 36 80.6 0 ..........................AAAGGAC... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 92.6 36 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAA # Left flank : TGATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : ATTGAAGCCAATCTAGAATATAGTTGTTGAAAAATGAATTCTCCATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTCAACAACTATAATTTTGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATGGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTGGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAATTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGTACGGTCCT # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //