Array 1 113-4457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOES010000006.1 Leptothoe spongobia TAU-MAC 1115 scaffold6_cov0, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 113 37 100.0 34 ..................................... CTGAATCGCTGGAAGGTACTGACAGTGATAGTTC 184 37 100.0 38 ..................................... GTCAGCGGGGATCTCATCGTCACAGCTGCTGATGGGTT 259 37 100.0 35 ..................................... AAAATACTCACGAGATCATCATTACGTTTGCAAAA 331 37 100.0 35 ..................................... GGCCAGAAAGCACTAGATGGGATGTCAGCAAAAGA 403 37 100.0 36 ..................................... AGTTAATTAGAGTTACAATACTCTCACTGTACACAC 476 37 100.0 36 ..................................... GAAGTAATGGAGTGTAACCCCCGTACTCTAGCTTTA 549 37 100.0 37 ..................................... GGCTGGTAGAAATAAATCCAGATAATCAATTAATTCA 623 37 100.0 37 ..................................... ATCAAGCATTTGAGGGTATAAGTATATCTAATCTGTA 697 37 100.0 34 ..................................... ATAGAACGATATATCGACACACTCCCAGACGTGA 768 37 100.0 34 ..................................... CATAGACCGGTGGGGGGTCAACCTGTAGATCCTT 839 37 100.0 36 ..................................... CCCCACCTTTAAGAGGATGGGGGAGTGCTCAGAGAT 912 37 100.0 38 ..................................... CTCGCCTACAATGCCACAGTCTTTTTCACGATCGCGCA 987 37 100.0 37 ..................................... CAAAGGTGCGCGATAAGTACGGGAAACCATGCATCAT 1061 37 100.0 36 ..................................... TTTTTGAGTGCCTTATCTCAGACGGGTTTGAGAATG 1134 37 100.0 36 ..................................... TGGGCAGCATGATTGAACTTGGTCCCAATGGCACCT 1207 37 100.0 36 ..................................... ACCGAACAAGGTTGGCAATGGTTGGCGCGGTAATGC 1280 37 100.0 37 ..................................... GTTCCATTTTGGATTGTTTTCATCACACACCTGCCGT 1354 37 100.0 37 ..................................... CCCACATCACATCTACCCAGTGGTGGGGGTCGCTGAA 1428 37 100.0 35 ..................................... AAACCTGGTCGCAGCCTGGACCATTTGCTCAAAGC 1500 37 100.0 35 ..................................... TGTATCGAGGAGCCGTGTGGGTATTGTCACTTGCC 1572 37 100.0 35 ..................................... CTTTTGGGGATTAAGGGAATCTATCTCAAGTGATG 1644 37 100.0 38 ..................................... CGAGGAGCCGACGACTGGGGATGATTTTCTTAAGGCCA 1719 37 100.0 34 ..................................... GTGTGAGCGCTGCCATGGTGCCAGTGAGGAAGAA 1790 37 100.0 36 ..................................... ATTCCTGGCGAATGCTTTCCATAAGATCCAGCACTT 1863 37 100.0 37 ..................................... TTCTCGCTTCCTTCATACTTCAACCTTTCTTTTCTAA 1937 37 100.0 35 ..................................... ATAGAAAACGGTATTCATCGGTATTGATAAGAAAC 2009 37 100.0 37 ..................................... CATGAGAAATATGAGTTAAGGTAAAAGCGTCTCGCTC 2083 37 100.0 36 ..................................... AAAATCAGGTGGGCCGATAGGCGGGTCCGAAGGTGG 2156 37 100.0 35 ..................................... CATCAGGCCAGCTCAAAGCGTTAGACGTGCGGGTC 2228 37 100.0 35 ..................................... GGCAACTGTCAGCGCGGGGATTGCTGTATATTCAA 2300 37 100.0 36 ..................................... GTATATAGGGCTAGGCTTTTGGGTGCTCTATGGCAA 2373 37 100.0 35 ..................................... CATCGCCAACGTTATGGAGTCCAGCTGAAAGGCAA 2445 37 100.0 41 ..................................... CTGTGTTCACACCTAAGACCCTTACAGACTAGGGCTTTCGG 2523 37 100.0 35 ..................................... CTTAGATATTCCCGTGTTCGATAGTTCTCAAATGC 2595 37 100.0 34 ..................................... TTTCAATATAAGAATGTTCCAACACAAGCAGTAA 2666 37 100.0 35 ..................................... TTATCGGTCTCACTCACAATAGCAACAGGTTTAAA 2738 37 100.0 35 ..................................... TTGAGGATTTGTCTTTGCGATCGCATTTCCGCCAG 2810 37 100.0 36 ..................................... TTATCAAAATATCCATGGGCTTGGAATTAGGCCCTC 2883 37 100.0 36 ..................................... CCAACTGGGCGCAACCATCAACGAGTCCTTCTCGTT 2956 37 100.0 35 ..................................... GAGTTGACAAACATCTTTGAGCGCTTATTGCCGGT 3028 37 100.0 35 ..................................... CTATCACGAGATTGACGTAGACAAGGAAGTTAATC 3100 37 100.0 36 ..................................... CTGCAGATTGCTTGTGCTCGTAGCGATCCACTGCAT 3173 37 100.0 36 ..................................... GACAGAAGCTAAGAAAGCTAATCTTTGCATAGTTGA 3246 37 100.0 35 ..................................... TTAAGGGTCAATTGGGAAAAACAGGAACTGGAGCA 3318 37 100.0 40 ..................................... GCGAGCCAAGAAAGGAACAGGGGAAAGAAAATACACTATT 3395 37 100.0 35 ..................................... AAAAATCTCAGTAAGCCATTGATGGGGAAAGAAAA 3467 37 100.0 34 ..................................... CGGTCTGACGGGACCAAACAGCTTGCAACTGCAA 3538 37 100.0 36 ..................................... CAGTTCCTCGCATGTCGTTGTTGGTGTCAATGGTGC 3611 37 100.0 35 ..................................... GTTAATTCTGGCCAATGCCCACTGCTCAGGAGAGA 3683 37 100.0 37 ..................................... GAAGCCAGGGGCAAATTGCGAGCATAGAAGGCAGAAC 3757 37 100.0 46 ..................................... CGAAGATAGTCCAGACAAAGGTGTTGCTGAGTGGCTTGTAGTCAAA 3840 37 100.0 37 ..................................... CTAACGCGTGCCCGTCCTGCTCCTGCTCTTTTGAGGA 3914 37 100.0 36 ..................................... ATGGGCAACTAGCTTTGCGTATGGCTTCCAGTATCG 3987 37 100.0 34 ..................................... CTGGGTGGCTGTGCTGTTTGAGTAGTTGGCGACG 4058 37 100.0 36 ..................................... CGTAATCGCACTTACGACCAAGCTGTAATCTTGGAG 4131 37 100.0 36 ..................................... GAGTATTGAGCCTAGCCATAGATATGTATACGTTGA 4204 37 100.0 36 ..................................... GCCAAGGCCCAGCAAGCCGAAAGCGAAAACAGCAAC 4277 37 100.0 34 ..................................... CTTTCTTGTTTTGTTGCCCATCGGCTAGAATATC 4348 37 100.0 36 ..................................... ATTTTCGATCCTAAAGTAGACTTTCCTACAGCAGAG 4421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 60 37 100.0 36 GTTTCAGTCCCGTTGATCGGGATTGGTGTTTGGCGAG # Left flank : TTATCCGAACCGAAACCTAATAGAGGCAGCCGATTGGCCACTTTTAGCTTAGACTTAGCGCAAGACCGGTTACACCCGAAAGGTAGATAAAATTAAAGCCGCTAGGTCTGCAG # Right flank : GTCCGCGCTCTCAAAAGCTTGCTTGGCAAGCCTTTCACCCATACTTTTGGCAAAGGTCAAAACTATAGCGTGATTTAGCTTAAATTAGCTAGCAGCCAACTTATCCAAAGATTCTTAGAACTATTCAATTATCAAGGTTCTAGCCATTTGGCAAACCCCTAGGGAATTTGCCCTTGCTTTAGTCTGCCAAAAAAACGAGGTGTTGACACCAATAATTCAGGAAAATTAGCACTACAGTACGATAGCCGTCTGCTGACGAGGTTTCTCAGAACCATAGGCAATAGTTCGCTTGACTGCACCAGCATCTAGCACATACACCCGGACAGAATCCTCATCCGTCTTGATTAATGTTTCTATCTGAGTTTGCAATTTAGTAAACTGCATACCCGTTAGAAAACACTCAAATACACTGTACTGAGTCCAGGTACCATAGCCAGACAATAGTTTATGCAAACGATTACGACGTTTATTCGCCGCCTTAGAATCAGGTAGATCGTAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTGATCGGGATTGGTGTTTGGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 19901-16044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOES010000055.1 Leptothoe spongobia TAU-MAC 1115 scaffold55_cov0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 19900 36 100.0 42 .................................... GGTGATGACGGAGTGATTTACGTAAACCCCCATGATCAAAAG 19822 36 100.0 40 .................................... ATGTGGATATGAGCCCGGACGTTAAAGATAGGGTAGAAGG 19746 36 100.0 43 .................................... ATGAATGCCGTAAGCCTGTCGACAAACAAAGGAAGGAAAAGCC 19667 36 100.0 42 .................................... CAGCTTCGATTCAGATGCAGCTCAACAGCCTGATCTTGAAGA 19589 36 100.0 43 .................................... GAGTATGACTGCTTAACTCAGAATGAAGAAGAGGTATATGATA 19510 36 100.0 38 .................................... AGTTCTTCTGTCGCATGCAGAATGGGATGACGCTGAGT 19436 36 100.0 41 .................................... GTTTTCAAGGAAGCTATGGCTGGCCGATTAGCGGCAATCGA 19359 36 100.0 44 .................................... CAAGAAAAAGGTCAAAACCGCCAAATTGGTAACAATTGATCTGA 19279 36 100.0 41 .................................... CGTTTCAGGTCAGAATCCAGTGCGAGAACCTCGTTCGCGAA 19202 36 100.0 44 .................................... GGCAACAAAACTCCTCAAGCTGGCCCACGACGACCGCAAACAAA 19122 36 100.0 45 .................................... AGCTATCACAAGACAAGGAGACGACCATGACACAGCGCTTAACTG 19041 36 100.0 44 .................................... GTTTTTTAGGAGGACATTATGACTGTGCGAACCTGTTTAGGCGA 18961 36 100.0 45 .................................... GCAACTGGCGCAGGTTTAGCGCTCAACTTCAACCTGGTCTTCCAA 18880 36 100.0 44 .................................... TACCATAGTTATAAGCGATGAGGATTTAGCATGGCTAAACTCAT 18800 36 100.0 41 .................................... AAGAGTCATACAATTTCAGCTTTTTGAATGGCGGGGTTACA 18723 36 100.0 39 .................................... GAGCAGACTTGTCTGGTGCGGTAGTCAAAGTCGAACAAG 18648 36 100.0 43 .................................... TAATTGGGTTTATAATCAAACTGGTGCTGATAAGAACGCTCAA 18569 36 100.0 40 .................................... ACAGGTACAGGCACAGATCCCACTAGCCGTGGTATTTTGG 18493 36 100.0 41 .................................... CTAAGCTGGGGGCTGAGATTACAGCCTATAAAGCTGAAATC 18416 36 100.0 43 .................................... CGTCCTCGGTTTGGCCCAGGAACTTTCTCAAGCTCTTCTGCTA 18337 36 100.0 40 .................................... AAGCGTTTCGGTTTTGTTGCTGTATTCGGAGTTAGCTCTG 18261 36 100.0 40 .................................... AGCAGCGACGATTTTCGAAGCATCCTTCCGTCTCCCATTG 18185 36 100.0 41 .................................... ATGCTGATGATACAAAAGGTCAAGAAATGGCTGAGAGCATG 18108 36 100.0 43 .................................... TTGAATCAGTAGTGGTACTGCCACAGTTTAGCGATCTAGACGA 18029 36 100.0 41 .................................... TGAAGCTTCGGATGAGCCGTTTGATAGGAGCGTGACTGCTT 17952 36 100.0 36 .................................... AAGCCGAAAACCCATCAGCTTCGTGCTGACCAAGTA 17880 36 100.0 43 .................................... GATCTGGTTGAGGGTGACCTATTTTTCACCAACTCGATAGTTG 17801 36 100.0 42 .................................... CAGCAAATCAAAGATCGCATCCAAAATGGCGGTACCACTATC 17723 36 100.0 43 .................................... ACTCAACGCGATGACATTCGTCACGGTAGCCAAATTGGCGAAG 17644 36 100.0 41 .................................... GTTCAGCGCTAATCAACTCGTTGGCGTTGGCAGGTAATGTA 17567 36 100.0 41 .................................... GTCAATCCCGCGCTGTGGGAGCAAATCTCCAACAGCATCAA 17490 36 100.0 41 .................................... TATAAGACCTCAACCGAAGGGGACTCTTATGATCCTGGACA 17413 36 100.0 39 .................................... CATTAAAACTAATACCGCTGGCGGAGGCAGCGGAGGGTC 17338 36 100.0 44 .................................... GCTTTGGCAACATCGTCTCAGCTAATCGAATCGTCGCCATTGTC 17258 36 100.0 41 .................................... CAAGTAATGTCTGAATTGCTCGGCATTGATGTCCCCGTCAA 17181 36 100.0 42 .................................... GCGTTTGTAGTTGATAAGCTTGATCCTACTAAGTGGGTTGCT 17103 36 100.0 41 .................................... GATATGCGCGGTAACGACGTCAACTACGATGGACTTTACAA 17026 36 100.0 47 .................................... CAATGGACTCTCGGTTTTGTTAGGCTCTCTCGAAGTCTGCTATCTTG 16943 36 100.0 37 .................................... CTTTGCCCCACAGACACACTGAGCGATAAACCGCTAA 16870 36 100.0 42 .................................... CGTACACGCTTTAATTTATCCGATAAAACGTATAAGTTTATG 16792 36 100.0 42 .................................... GCAAGCCGATGTCCAGCAGATCTTGCGCTCTGTTTTCAATCA 16714 36 100.0 53 .................................... TGTTCTCGCGCAGAATCAGTTTCCTGATCCGGCACAGCAGCCTGACCCGGCTG 16625 36 100.0 41 .................................... CAGAACACTTTTGGCGCTTGCTTGTTGCTTTTGGTATCTAA 16548 36 100.0 39 .................................... GATTGTAGCCACGGCTGTGAATTGCTGTGGCTATCGCCA 16473 36 100.0 43 .................................... CTGGTTGGGATTTAGTAAAGAGAACTGGAACCAAGAAGGTCAC 16394 36 100.0 41 .................................... CTGATGTTGGAATCCAAGTCTTGAATACCAACACCGGGCGT 16317 36 100.0 41 .................................... CAAAAAGAAAAAGGGCAAGACTATCCCTAATGAGGAGTCTC 16240 36 100.0 47 .................................... GATTACCTAGGTTCACCTATATCTGGTAACAGCTTTAAGTTGATTTA 16157 36 100.0 42 .................................... ACAGAGTTCCCTTATTTGATGCAGACCACGCTGCGGCTGCTG 16079 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 50 36 100.0 42 GTTTCCAACTATTCCGATTTCAACTAATCGGTAAAG # Left flank : TTTTGCTCACCGATGACGCCCGTTGCTTGCCCAGCCTCTGGTGAGCCTCACTATCGCTGAGTCCTTGAAGCTCCTCATAGCTCAGTCCTTTGGCCGTTGCTCGACGGATGTAGTCTTGGACCGTCGAGCGCGCAACCGCGCAACTACGCGCGATTTGGGTTTGGTTATACCCCAAATCGTGCAGTCGAATGATTTCTCTAAATTTCTCCATGGACAGTAATTTTCCTTGGTGTTTCTTTGGCATTGGGGCTCATTAACCTCACGTTCTTGTGCGAACGCAGTCTAATGGCCTCCTATGCAGCGGGTTAAATTACCTGTCCAAATAGACCTTATTTTTGATGCCGAAGCACACATCACTCAGGTGCCGAAGCAACATCATTCAGGTGCCGAAGTTGACGTCATTCAGATGCCGGAACAAACATCATTGGGGTGCCGAAGTACACATCATTTTGCAGGTAAAGTACGGTTTTTCCCACGGTTGAAAAAATCGAGGGGAGTTA # Right flank : ACACCCCCAGCAGAAGCCCGTCATAGAGCAAGCTCCAGACAAGCAAACCACGGAGGTCTATATTCCTATCCTATCAGCCCTATGCCCCAACCATACTAATCGCTGAAACTATTGCCAGATAAGGCCCCACGGAGGTCAACTAAAACATAAGGCTTTCAGCGATCACCCTACCTCCGTGGTCAACACCAGTTACTAACAGTAACTTAGCCAAGCAATAGGCTAAACAATATACGTTTCAGGCGGCTCTTCAGGCGGCAAACTCCCAATCGTTAATGCCTGCGACATTGCCTCTTTAGAAATCCAATAAAACCGCACATTATCTTCAGATTCTTTAACTCGCCGCCGCACCTGATCGCACAGCTTTCGCATATCTGACAAAGTCAAAAAACATTCAAATACTGAATATTGAACCCGACGACCATACCCTTCCAAAAACGTCGCCAGCTTCGTACGACGCTTATCATCAGGAATATCATAAACCACCAACACCAGCATCAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTATTCCGATTTCAACTAATCGGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 24730-27397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOES010000055.1 Leptothoe spongobia TAU-MAC 1115 scaffold55_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================== ================== 24730 36 100.0 42 .................................... GCTCTGCTTGTACTAGCTCTTGGTATAATGCATTAAAACCTG 24808 36 100.0 43 .................................... TGGCAGGTGTAACGACATTCCAAAATTCAATGGCCTTGATTGT 24887 36 100.0 40 .................................... GTTCTAATGTGGGATCATATCCTACTTCGTAACCTATTGG 24963 36 100.0 44 .................................... GATCTCTAAGATTTCAGATGTGGTAAAGTCTTCATCGCGCGAAC 25043 36 100.0 38 .................................... GCCGAAAGTAGGCTACGGGGATTTGGCCTGGCTCGGGA 25117 36 100.0 40 .................................... GCTCAGAAGCCTCAGCTGATTGATTGCCGGGTGCAAAAAG 25193 36 100.0 41 .................................... ACTTCACCGAGATTGCAAGCAATTTTTTATTGCCTCCAGAA 25270 36 100.0 41 .................................... TAACCCGTTCACAACTTTATACCCTTGTTCTAACAAACCTG 25347 36 100.0 42 .................................... TTTAATCCTGCAACCATCAGCAACTTGGCGTTACCAAGCATT 25425 36 100.0 42 .................................... TCCGCCACCTCGTGGCCGTCGCTTGCTTCGATACTTAATCTT 25503 36 100.0 41 .................................... GGGATTTGGACCCAGTCCACCTCCATCTCCATTTCCAGATT 25580 36 100.0 44 .................................... CTTGAAAGTTGCCGCCAAGCATTCGACTGTTGGTACATCGATAA 25660 36 97.2 40 ......................A............. TATACTTCGATAGTGCTCTCATGGATATCATCAGTATCAC 25736 36 100.0 36 .................................... TCGCTGCTTAGCGCCCCGACGCTTTTGTCATTTTGA 25808 36 100.0 38 .................................... TAGAGGTACAAACAAGAGATGCCAACATCTCTGCTCCA 25882 36 100.0 43 .................................... GGCCTTTTGCAGCCAAAAAATATCAAATCCAGCTACATGAGCC 25961 36 100.0 41 .................................... GTCATTTTTTGGAAGTTTTACTACTAATTGGTACTGTTTAC 26038 36 100.0 40 .................................... GAGAGTCTTGTCTTCTGAGAGAATCACAACCTTGGGTAAT 26114 36 100.0 43 .................................... CCATAGTTTTCACTATTAGGGTTATTAACAAATTGTTGTGTTG 26193 36 100.0 46 .................................... TGGTTTTTCTTTGTTGCCATGCAGTCGTCGAAGTCACTATCAACGG 26275 36 97.2 44 ............................G....... CCTTCTTCAGCTAAAAGATACTGATCGGGTAATTTGCCTTTAAA 26355 36 100.0 49 .................................... GAAAGGTTTGATTAGGTCTATTAGGGGTAAAGACAAGAACTTGCTAATA 26440 36 100.0 43 .................................... TCCCACACCCGGTGAATAGTGAAACGCATAATACCGTTTGCAT 26519 36 100.0 46 .................................... AAGGGTTGGAAACGAGTTGGCCTACCATATCTTTAGTAAGCATGAG 26601 36 100.0 42 .................................... GAGGTCACGGGTTTTCCAGTGTCTTTGTTAATAACGCTCCAT 26679 36 100.0 47 .................................... CCTTCCTGCCAGAAATTTGAGAGCTGGCAGTTTACACCCCCAAACAT 26762 36 100.0 141 .................................... ACTTCGAAAGGCGGAGAACGGAGGACGGAAATAGGAAATGAAAAGGCCTTTGAATTTGATATGATCTCCATTAACGAATTCTTGGAGCTTTATCTATTAACCGATTATCCATTTTCCGTTTTCCGCCTTCACTCTTCCATC 26939 36 100.0 41 .................................... CTCTCATCGAGACCTGCTGCAATGTATTTGTCATCGGTCGA GACT [26944] 27020 36 97.2 46 ..A................................. TTCTTACGAGGCCCGTCTGCATTATTGTAAATTATACCCTCAAGGT 27102 36 97.2 42 ....G............................... CGATCGAATGCCTCCGAAGAGGTAAACGTATGACAGCCTTGA 27180 36 100.0 142 .................................... GTTTCAAAAGTCGGAAAACGGAGGACGACAATAGGAAAAAAGAGAAGCTTTTTAGTTTGATATAATTTCAATGAACAAATTTTTGGAGCTTTATCCATTAACCGATCATCCCTTTTCCGTTTTCCATCTTCATCCTTCCGCC 27358 36 97.2 0 ...................................T | AACT [27363] ========== ====== ====== ====== ==================================== ============================================================================================================================================== ================== 32 36 99.6 49 CTTTACCGATTAGTTGAAATCGGAATAGTTGGAAAC # Left flank : AAAACGGAGGACGGAAATAGGAAACAGAGAGGCTTCTTAAGTGGGAATCCTTGTAATGAGTAGATCCTTAACCCATTGCTTCTTGCGATCACCCCTTTTCCGTGCAAGGACACAGAGTTTACTGTTGTCTAAGGTAAATCAGTTATCTGTGAGCATTTGTCGATCCTCTCTTTTTTCCGCCTTCCGTCTTCACTCTTCCGTCCTTAAGAGAGGCAATGTCGCAGGCATTAACGATTGGGAGTTTGCCGCCTGAAGAGCCGCCTGAAACGTATATTGTTTAGCCTATTGCTTGGCTAAGTTACTGTTAGTAACTGGTGTTGACCACGGAGGTAGGGTGATCGCTGAAAGCCTTATGTTTTAGTTGACCTCCGTGGGGCCTTATCTGGCAATAGTTTCAGCGATTAGTATGGTTGGGGCATAGGGCTGATAGGATAGGAATATAGACCTCCGTGGTTTGCTTGTCTGGAGCTTGCTCTATGACGGGCTTCTGCTGGGGGTGT # Right flank : TACCACATTGTTGGCACTAACTATTTTACCGAATCCGATGTTCTTTCTTATTTAGTTGGAATCCGATCATTGGAGATAGATCAAGAATAAAAAAGCCCTTTTCAAAAGCATGAAAAGGGCTTTTTCTGAAATTCAATTTCCCTAAACTACCTAATCGAGCTTCACAATCACCCGCTTCAACTCATCCACCATCCACCCAGAACCTACAGCCCCAAACAACTCCACATACCCCCCATACAACCACAAAGTCCCCTCCCGTCCCCCCGAAAAATATCCCCAAACCCCATCCCCATAAACCCGCAACAACCCCAACAACGACCGCCCATTATGCAACTTATCCGCTAATACAATTCGCTGTACCTCAGGTGTTGCAGCTCGAATCTGCTCCAAATACAGCCGCTTCTGATCCCTCCAGCCTAGGCCAGCTATAGCGTTCGGTTGCGTACACCCCAACACCAACTCCGCAACAACAGACCCAAACCGCTCACCAATCACCCCTA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTAGTTGAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 87045-90026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOES010000007.1 Leptothoe spongobia TAU-MAC 1115 scaffold7_cov0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 87045 37 100.0 35 ..................................... ATTTTTAAGCTTATTTTTAGCATGATATTAGCGTT 87117 37 100.0 36 ..................................... GTCCCCGGCTGCGATGATAACGCCGTCGTCCGTAAC 87190 37 100.0 39 ..................................... TAGGGGGTGAGCCAGTTTATTAAACCGGGTTTGATTGGC 87266 37 100.0 34 ..................................... AGGCTGAGGGGGGTTTCAGTGTCCAACGGTAATC 87337 37 100.0 34 ..................................... AGGTCGAGCTTGAACGGGTCTAGTTCGGTTGTAA 87408 37 100.0 35 ..................................... TCTTAGCCCGCCACTTTGCCAGCTCATCAGTGGGC 87480 37 100.0 35 ..................................... AGGCTTAAAACGAATTAACCCGCCGCGTTCAGCAA 87552 37 100.0 35 ..................................... ATGAACGTGATTCGCCCGAACAAGGGAAACAACAG 87624 37 100.0 35 ..................................... TTTGCCCTTGGCTACAGTGGCGTTATTGGTTTTTT 87696 37 100.0 34 ..................................... TGTTGTTGATGTAGTTGACATAATCTCTGATATG 87767 37 100.0 34 ..................................... ATTTTGAAAGGGGACGGGATAGACGAACCCCCCG 87838 37 100.0 34 ..................................... TAATTCTTTTCCGAGTGCTCCAGCTCTCCATAGG 87909 37 100.0 34 ..................................... TTTGAGTGTTGATGATGTCAATATTGATAAACGC 87980 37 100.0 34 ..................................... CAGCGCTTGACCATTCCAGACGCCTTAACCCGGT 88051 37 100.0 35 ..................................... TAAGCTGCCCCCACCCAGGCGATTAGAAAGATTAC 88123 37 100.0 34 ..................................... ACTGGCCTATGCGAATAAACTGATCTTTTGCTTC 88194 37 100.0 39 ..................................... CGGATACGTATTTGGCGGGGATATTGACGCCGTTATAAG 88270 37 100.0 35 ..................................... CCGGTGGGACATTCCTGGTTGGTGAAGCGCCTGGG 88342 37 100.0 34 ..................................... AAGTCTGAAAATCCTTGGTATTACGAACAATCAA 88413 37 100.0 36 ..................................... GCGAAAGGAGTGACACCCCCCCCATGAACATAATCG 88486 37 100.0 34 ..................................... AACAATTGCTCTAATGTTCCGATCATGGGGACGA 88557 37 100.0 38 ..................................... ATAGAAGGCGTAGGTTTAGAAATCAGTGCAATTAGGGC 88632 37 100.0 41 ..................................... CAACTTGTAAGACTTTATGCAAAAGCTATAAAGCTAAGAAG 88710 37 100.0 35 ..................................... GAAAAAGGAGCTACAGCCATGGAGCTGGGCTTTCA 88782 37 100.0 35 ..................................... TAGAGGTCATCAGCTAGGGTCTGGCCCTAGTTGTG 88854 37 100.0 34 ..................................... GCCATACCGCGTTTTGTATGGGTTTGGGCACCAT 88925 37 100.0 34 ..................................... CACTTGCCATATTTCAGCGCTGACGGGCCACCGG 88996 37 100.0 36 ..................................... CCATTACAGGCCATTGTCTGGAACGGGAACCAGGCA 89069 37 100.0 35 ..................................... CAAGCGTTGCCGTTGCCGTTGCCGTTGTTGCTGTG 89141 37 100.0 34 ..................................... GTAATCTTAATTCTCCAAGCAAGTTGATTATTGA 89212 37 100.0 34 ..................................... CATCAGAGCCCCGCATAAAAACCATCGACCTATC 89283 37 100.0 34 ..................................... AGGATTTTCACATTTTGTCCATCGACTCATATTC 89354 37 100.0 35 ..................................... CAGTCGGCTCTCGCCTAAAGTCAGCCACTACGCTA 89426 37 100.0 35 ..................................... AGATTGTTGTTGCTATCTGCCAGTTAAGCGACTTG 89498 37 100.0 34 ..................................... GCTCCAACTGGCTCTGGCAAGTCGGTCTTGTTGG 89569 37 100.0 34 ..................................... AGGAGCCAATGGAGTAGGAGAGTCGACTTTATTG 89640 37 100.0 35 ..................................... AAGGTAGATAGCCGTAAGCTAGCAACGTTAGAGAG 89712 37 100.0 35 ..................................... ACCATCGAAATACCAATAGCTAAATTTCTTTCGCA 89784 37 100.0 35 ..................................... ATCTAGAAAGTTTTGAGTATCTTGCAATATTTCTA 89856 37 100.0 26 ..................................... TCAGTATCGGTCCAATCCCCCTGCAT Deletion [89919] 89919 37 94.6 34 .C.......C........................... CGATGTGGGTAATGAGTCTGAATCCATGAGCTGA 89990 37 81.1 0 A........C....T................C..TTA | ========== ====== ====== ====== ===================================== ========================================= ================== 42 37 99.4 35 GTCCCAACATCCTCCAAACCCTCTCAGGGATTGAAAC # Left flank : TCTGAAGATAAACGTCGAACTAAAATTCACAAGGCTCTGACATCCTATGGTCAGTGGATGCAATTTAGTGTGTTTGAGTGTAGCCTTACAAATACTCAATATGCTAAGTTACGCAATCGTCTGAATCAACTCATAAAGCCTGACGAAGATAGTATTCGGTTTTATTTTTTGTGCGAGTGCTGCCAGAAAAAAGTTGAGCGTATTGGTGGCGAACTAGTTCGAGACGATACTGTATTTTTTGCTTAAGTGCTGCTCGTGGATAGGTAGGTGTTGGGAATGTTTTGGGCAGATATTTGCGAAAATGACTGATATACAAGGATTGCAGTGCTTACTATAGTATTAGGGGTTCGCGCAATGGCTGAAATGCTTGAATGGCCTGGGGTTTCGCTTTTTTGCTTGCTTGCTATATGCTTCGATTTTTGGCAGCAATGCTATTATTTGGATAGTCCGCGAATTCGAACCTTGAAAACTAAATATGACAAGGCTTTTCAAAGTGCGCC # Right flank : AACATTGGCCTATAAAAAATGAGTTTATTCCCCTAATAAGCAATAAACTTGATTACTGGCTGAGCTCGTACCCTCTAAAACATGACGCCTCCTAATGGACTAACCTGATGCTGCCCTTAACCAGGCGTCTGGTCTGTGTTTTAAATGAGACACATTAGGCAGCTACCATGACCGGAAAAGTCTCTTGTACCGCTGGATGAACAATCTTGCCATCGGTAACATTCAATCCCTGGGCCAGAGCCGCATCTTTTACAAAAGCGTCTTGCCCATGGTCAGCTAGTTTGAGAACATAGGGTAAAGTGCTGTTATTCAATGCCTGGGTTGCTGTCCAAGGGGTGGCTCCTGGCATGTTGGGGACACCAAAGTGAACCACACCTGATTCAACATAAGTAGGCTGGGTGTGGGATGTGGGGCGCAAGGTTTCAATGCAGCCACCCTGATCAACAGCAACATCAATGATGACTGAACCAGGACGCATTTTTGTAACCAGGGCTTGGTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAACATCCTCCAAACCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //