Array 1 476525-478504 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUO01000027.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_m29 m29_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476525 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 476586 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 476647 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 476708 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 476769 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 476830 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 476891 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 476952 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 477013 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 477074 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 477135 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 477196 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 477257 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 477318 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 477379 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 477440 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 477501 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 477562 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 477623 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 477684 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 477745 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 477806 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 477867 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 477928 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 477989 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 478050 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 478111 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 478172 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 478233 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 478294 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 478355 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 478416 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 478477 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494768-496200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUO01000027.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_m29 m29_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 494768 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 494829 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 494890 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 494951 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 495012 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 495073 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 495134 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 495195 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 495256 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 495317 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 495378 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 495439 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 495500 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 495561 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 495622 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 495683 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 495744 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 495805 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 495866 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 495927 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 495988 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 496049 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 496110 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 496171 29 96.6 0 ............T................ | A [496198] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //