Array 1 63118-61590 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGH01000002.1 Moraxella catarrhalis strain COPD_M142 NODE_2_length_347597_cov_51.4121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63117 28 100.0 32 ............................ GCTGGGCAGGGGCGGAGTTTTGGGAACAAGCA 63057 28 100.0 32 ............................ AGTGCCACCGACCGCCTTGTTGACGATGTGGT 62997 28 100.0 32 ............................ GCCGCCAAAAAACGCTTGATTAAAGAGTTTTT 62937 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 62877 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 62817 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 62757 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 62697 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 62637 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 62577 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 62517 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 62457 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 62397 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 62337 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 62277 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 62217 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 62157 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 62097 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 62037 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 61977 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 61917 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 61857 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 61797 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 61737 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 61677 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61617 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //