Array 1 2129-1178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVC010000008.1 Listeria booriae strain FSL L7-0994 NODE_8_length_166872_cov_20.086531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2128 30 100.0 36 .............................. TCATATCCCCCCCTCATATGAAAAATTCAAAAAAAC 2062 30 100.0 37 .............................. GTTAGAACCAGTGCTAGATATTACTGGAACGAAAGTG 1995 30 100.0 34 .............................. TAAAATTATACGGGGTACCGTCTTTATTGATAAC 1931 30 100.0 39 .............................. ACATGTTTTTTTCACAACTTAAGATTTGATGGTTCTTTC 1862 30 100.0 38 .............................. ATTTCATACTGCCCGCAAATTGCACATGACATAGATAT 1794 30 100.0 36 .............................. TCAATTTCACCTTTTTCTAAAAGTTCTAAATATGTT 1728 30 100.0 34 .............................. TCCGTTCTCGCTGCTAAAAGTCTTGCTTGTTCTA 1664 30 100.0 36 .............................. CGACGTTATCAAACGCTAACATACCCTCTAAGCTTT 1598 30 100.0 35 .............................. TTATATTTCCCAACATGATTATACGTTACTGCAAC 1533 30 100.0 34 .............................. CGAGGTGGTCCAGCTGACGAACTTTGGGTATCTG 1469 30 100.0 36 .............................. ATACGTTAGAGTAAGAGTAATGCCCTACCCTAATGG 1403 30 100.0 36 .............................. AGGCTTTGCGCGGCATCCCCCATTGTTTGCTTGGTG 1337 30 100.0 35 .............................. ATGGCTGTGCCGATACCAGGAACAACCGATCCAAT 1272 30 100.0 35 .............................. GTGTATTCAATTGCCAAATTTTGTTCCTCCTAATT 1207 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CAGACAGATGCGGCATGAGCGGAGTTTGACAGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACTATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCCATTGCTATTGATATGACGACTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 45409-44526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVC010000007.1 Listeria booriae strain FSL L7-0994 NODE_7_length_204306_cov_27.665919, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45408 30 100.0 36 .............................. TAATAATGCTTGCGTCACTTCCACCAATGCCTTCTC 45342 30 100.0 36 .............................. ATTGCTGCTACGATTGCCACAATCCCCATAATAAAT 45276 30 100.0 36 .............................. CTAATCTATTCTTTACGCGTATTGTTTTTTGGTCGC 45210 30 100.0 36 .............................. TCTTTAATACTGTTGAAAATTTGTATCAAATCGAGA 45144 30 100.0 36 .............................. TTTGGACAACCTAACATTTATGGTCGTGGTGACATT 45078 30 100.0 37 .............................. TTCCATCTGGCAACATTTCATTTGGTGATTGTGTGGC 45011 30 100.0 35 .............................. TCGATATCTACGCCGAAATATGGCGGTTTGAAATA 44946 30 100.0 36 .............................. TGACGCTTGCCGTTGTTATTACGCTCGCCTTTTTTA 44880 30 100.0 38 .............................. AACAATCTAGCCTCCTTAATCGTTACAAAATACATCGA 44812 30 100.0 35 .............................. AAACTTTCGCATTAAAACTGTGACTGACATATCAA 44747 30 100.0 35 .............................. TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 44682 30 100.0 36 .............................. CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 44616 30 83.3 32 .G.........G.T..............TG TCGCTGTATCCCCTGGTTTTTTAACGCGTCCA 44554 29 73.3 0 .............T..G.G...-.CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 96.9 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCAAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGATCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTATTTTTGGAGTTTGGGTTGTAAGATTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCCCATATGTTGAACATTTTTAGCATGCAGTTAACAACAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATGTCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCTACATCTCCAGAGAATTGACCAGTCACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 49478-48655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVC010000007.1 Listeria booriae strain FSL L7-0994 NODE_7_length_204306_cov_27.665919, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49477 30 100.0 36 .............................. CTATTTTCTCAAATATCGTTGAATTAAAAGAGGTTC 49411 30 100.0 37 .............................. AAATCCGAAACTGGTGACCAAATAGAACAGCGGCTAA 49344 30 100.0 39 .............................. CCGAGAATCAAGAGCTATTAGAAGAGGAAGAGGCTTTAT 49275 30 100.0 36 .............................. CGCAGCAGTATCGAAGTTGTTCGTTTAGGTGATTTT 49209 30 100.0 36 .............................. TTTGAAAACACTTCTCAAAATACGATGTCGCTTCTC 49143 30 100.0 34 .............................. GCCGTCGACTCGTCGGATCTCGCCCGCCTCCTCG 49079 30 100.0 36 .............................. CCGCGTCGATATGATGCACATCTGATCCAGGTTTAC 49013 30 96.7 36 ....................T......... GTAGATATAAGCAAGCTCAAAACGAATGATATTGTG 48947 30 96.7 34 ....................T......... ACCTCCATTTATATCACCCCTCAAAGTGATTATA 48883 30 96.7 35 ....................T......... CAACTGCGAGCGTACAAAAGTAGTTATCAGTTACA 48818 30 100.0 37 .............................. AAGGCAATAATATTCTGCAAACCATCCGGCAGATTGC 48751 30 96.7 37 ....................T......... TTTGAAATAAGACGCAGTATTTCTGATTTAACGCATT 48684 30 83.3 0 .................A......A.G.TC | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 97.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATATGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCGAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACCCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAATACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 60195-61669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVC010000016.1 Listeria booriae strain FSL L7-0994 NODE_16_length_71180_cov_21.708929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60195 30 100.0 37 .............................. CGCGGATAATGCCGGATATTGAAATTATCAAAAATAA 60262 30 100.0 35 .............................. TGCGGAGAGTCACTTTTCAAAGCGTTATTAACTCC 60327 30 100.0 36 .............................. GCCTGACTTGATTTCAGTTGAAGGCTTGTATTTATC 60393 30 100.0 36 .............................. TTGTTTTCTGGTAAGATGCTAGTTTGAATCATGCAA 60459 30 100.0 34 .............................. CATGTTGTGACTAAGCCTATTATCTGCTTTTTCT 60523 30 100.0 34 .............................. TCTTAACTACCTCCTATTCAAAAGGGGCAATATG 60587 30 100.0 34 .............................. AAAGTAGCGTTTAATAAGATTTTATAAGGTTTCT 60651 30 100.0 36 .............................. CGTCTCTATTTCGGCGATTTTAAATCGTTCTATATT 60717 30 100.0 35 .............................. ATACTAGAATTACTTTAACGGAGTAAAGAAGTTTG 60782 30 100.0 37 .............................. GTTCCTTTTTCTGGTCTTCATCAGTACTTGCTTCAAC 60849 30 100.0 36 .............................. TGTTCTTGAAGTAGCCTTTTTGTTCTTCTTTACCTC 60915 30 100.0 34 .............................. ACAATTTTTTCGTCGTGTTATATTTTTCAATCCT 60979 30 100.0 36 .............................. AGGGGCAATGTGAAGTACACAATTTTGTTCGCCTTC 61045 30 100.0 36 .............................. TGTCTATGCGAAAGGAATCGCAGCAGGAGGAGCAAG 61111 30 100.0 37 .............................. CTCGTAATTCAGGCGATTAAGCAAACGGATATTATCC 61178 30 100.0 34 .............................. GACTGCACAATGGACGACATTATGAAAGAACTGC 61242 30 100.0 36 .............................. CATAAATTCCTCGTGTTTTATGTTTTTCAGAATAAA 61308 30 100.0 36 .............................. ATACAATTCAGGAATATATCGTACATCATCCCGAAG 61374 30 100.0 37 .............................. AGCGCAAGCATGATGCGCGATGGAGAATGTATTTTCA 61441 30 96.7 36 .............T................ AGAGTAAAAGTCCCAATGCACAGCAGAGGAGATTAC 61507 30 96.7 37 .............T................ GTTATAACCGGTCCTATTATCATCCATGCAGCACCTA 61574 30 90.0 36 .............T............G.G. AAGGACAAAGGCCAACCGGTACACTTTACAAACCAG 61640 30 76.7 0 .......A.C...T.C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 98.3 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGCTAAGCATTGGTATTAAAGGGTTTAAACCTGTTTTCGGAGTTTGGATTGTAAGGTTGGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATCTGTTTAGCTACGATTACTTTGGCAGACAATCTCTTAGCCAGTATACGCTACTTTCCAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATCTTCCTGGTGTGTCGTA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //