Array 1 1483-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHC01000022.1 Bifidobacterium pseudolongum subsp. globosum strain 1619B Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1482 36 100.0 28 .................................... AGAATGTTGGGCGAAGCAGTTTCTTGCC 1418 36 100.0 28 .................................... TATACGCCGGACGAACGCGGCGACGCGG 1354 36 100.0 28 .................................... ATGGTCGGCAGGGGGCGCCGCATAGCAT 1290 36 100.0 28 .................................... ACCCGAACGGCGACCGTCACAAGCCAAT 1226 36 100.0 28 .................................... TGCCTGATTTTTTCGACACGCCGGATTT 1162 36 100.0 28 .................................... GACTGGTGCGACTGGTGTGAGCGTGACC 1098 36 100.0 28 .................................... CATTCGTCTGCCGAATGGTGGTCGTATC 1034 36 100.0 28 .................................... CCCGTCGAGTTTGATGCCGGTCAGGCCC 970 36 100.0 28 .................................... ATTGGCGACGGTGATTTCGCTCACCACC 906 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : CCAGTTCCATTGACGAGTTTGCGCAGCAATTTGGCTTGTATTGCGAGTCAAAGGAGAGAGTATTGACAACTCCGATTTTTGGAGGACAGGATGAAAAAGGATGAGGAGAGTGGGGGAATGTGGTGCTTGGTGATGTTTGATTTGCCTGTGCAGACCAGGAATGAACGACGCGAGGCAACAGCGTTCAGGAATATGCTGCTTGATATGGGTTATATGATGGTGCAGTTCTCCGTGTATGCGAGATATTCACCAACCCAATCGGGAAACCGATCCACGGTGAAAATGATTAAGCAGCATTTACCGTCCGGCGGGAAAGTACGGGTGGTGCATATTAGCGACCATCAATGGGCACAATCTCTGCGTTTTGTCAACGAGGTTCCTCAAAACGATGTGGAGGCACCAGATGTCTGCACTGTTTTTTGAACATCTTTTTAATAAAAATCATTGGGAAACCTACCTTCTTGGCAGGCTA # Right flank : GCCGCTACCGCGTACCCGTCCCGGCCCACAAGTCTAGGCATATAGGAACTAAAGTTATTGATTTAGACTCCTAGTCGGTGGTGTTTGGGTAGCGGGCGGCGGTGTGGAATTCGTTCCAGTCGATGCCAGTGCCGAGGATGGGTTGGCTCATGGGTTCGTCATCGTTGTTGTCGTGGTTGGTGCCGGTCTTGGCGTCCTGGCCGTGTTGTTTGAGGATGCGGGCCGGGTCGGGTTTGGCGCTATGCATATAGCAGTGCCATTCGCAGTGTGTTTTAGCAATTTGCGTTCCGCATTGTGAGCAGTGTTTTTCAGCAGGGTGAGCAGCGGCTTTTCCGCATGGTCGGCGGTATTGCCGCTGCGCGCTGGTTTTTGGGTTATTTGGTCATGAGTGCGTGTTCGCTTCGGTATGAGCCTCCTTGGAATCTGATGATGCGGCCGTGGTGGACGGTGCGGTCGATGAGGGCGGCGGCCATGTTCGCGTCGCCCAGGACACGTCCCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 295-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHC01000025.1 Bifidobacterium pseudolongum subsp. globosum strain 1619B Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 294 36 100.0 28 .................................... GTACCCGGTATACTATTGATTTGGCCGC 230 36 100.0 27 .................................... CAGCACCGCGAACACTGCCGGCAATGG 167 36 100.0 28 .................................... TGGTCTTGCGTGTCGTGTCTTGAAATGT 103 36 100.0 28 .................................... AGCCGATTGAGGGTTATCCGGGATTCTA 39 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 100.0 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : AGCAGGCACCAGCCGTTCACGTAGGTGCCGTCGGCCATGACCACGCGGTGCACCACGCCATCAGGTTCGATGCGCGGCTCGAGCCGCCAGCACCAGTCCACGCATTTTGCGGAAGTTGCGCGCGCTCTCCGGGCGTTTGCGCTGCGGCGCGGCCTCGAGCAGCCAGTCCAGGAACTCCGCCAACTGGGTGCGGCGCCGTTTGGTGTTGTTCCTGGTGCCGGCGGTCAGCCTGCATCCATCGCACTGCCAACGCTGCCGGCCCATGCGGTCGTGCCCGTTCTTGCGCATCGGCGAGTGGCAGACCGGGCATTTCTTCGCTTGCTTCGAACGTGTCCTCATGACACACATTGCACACGAAACCACGCAAGCAGATGGACACCGCCATCCGCAACAGGGCGACACGCTTACTGCCACAAAGGCAAACCGGAGTCTAAATCAATAACTTTAGTTCCTATATGCCCTAATTTCCAGCGCGACCGCGAGGATCACACCGAGGATGG # Right flank : CCAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1247-635 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHC01000030.1 Bifidobacterium pseudolongum subsp. globosum strain 1619B Contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1246 36 100.0 28 .................................... AGAATGTTGGGCGAAGCAGTTTCTTGCC 1182 36 100.0 28 .................................... TATACGCCGGACGAACGCGGCGACGCGG 1118 36 100.0 28 .................................... ATGGTCGGCAGGGGGCGCCGCATAGCAT 1054 36 100.0 28 .................................... ACCCGAACGGCGACCGTCACAAGCCAAT 990 36 100.0 28 .................................... TGCCTGATTTTTTCGACACGCCGGATTT 926 36 100.0 28 .................................... GACTGGTGCGACTGGTGTGAGCGTGACC 862 36 100.0 28 .................................... CATTCGTCTGCCGAATGGTGGTCGTATC 798 36 100.0 28 .................................... CCCGTCGAGTTTGATGCCGGTCAGGCCC 734 36 100.0 28 .................................... ATTGGCGACGGTGATTTCGCTCACCACC 670 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : ACCAGGAATGAACGACGCGAGGCAACAGCGTTCAGGAATATGCTGCTTGATATGGGTTATATGATGGTGCAGTTCTCCGTGTATGCGAGATATTCACCAACCCAATCGGGAAACCGATCCACGGTGAAAATGATTAAGCAGCATTTACCGTCCGGCGGGAAAGTACGGGTGGTGCATATTAGCGACCATCAATGGGCACAATCTCTGCGTTTTGTCAACGAGGTTCCTCAAAACGATGTGGAGGCACCAGATGTCTGCACTGTTTTTTGAACATCTTTTTAATAAAAATCATTGGGAAACCTACCTTCTTGGCAGGCTA # Right flank : GCCGCTACCGCGTACCCGTCCCGGCCCACAAGTCTAGGCATATAGGAACTAAAGTTATTGATTTAGACTCCTAGTCGGTGGTGTTTGGGTAGCGGGCGGCGGTGTGGAATTCGTTCCAGTCGATGCCAGTGCCGAGGATGGGTTGGCTCATGGGTTCGTCATCGTTGTTGTCGTGGTTGGTGCCGGTCTTGGCGTCCTGGCCGTGTTGTTTGAGGATGCGGGCCGGGTCGGGTTTGGCGCTATGCATATAGCAGTGCCATTCGCAGTGTGTTTTAGCAATTTGCGTTCCGCATTGTGAGCAGTGTTTTTCAGCAGGGTGAGCAGCGGCTTTTCCGCATGGTCGGCGGTATTGCCGCTGCGCGCTGGTTTTTGGGTTATTTGGTCATGAGTGCGTGTTCGCTTCGGTATGAGCCTCCTTGGAATCTGATGATGCGGCCGTGGTGGACGGTGCGGTCGATGAGGGCGGCGGCCATGTTCGCGTCGCCCAGGACACGTCCCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 6973-6286 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHC01000012.1 Bifidobacterium pseudolongum subsp. globosum strain 1619B Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6972 36 100.0 28 .................................... GTACCCGGTATACTATTGATTTGGCCGC 6908 36 100.0 27 .................................... CAGCACCGCGAACACTGCCGGCAATGG 6845 36 100.0 28 .................................... TGGTCTTGCGTGTCGTGTCTTGAAATGT 6781 36 100.0 28 .................................... AGCCGATTGAGGGTTATCCGGGATTCTA 6717 36 100.0 28 .................................... CAAGCTCGCACAGGAGGCCGCGGCCGCT 6653 36 97.2 28 ...............................T.... GCGCCGAATGATGCTCACCAGCAAAGAG 6589 36 100.0 27 .................................... ACCACGACTGGCAACCTCGACGTGTAC 6526 36 100.0 28 .................................... TGTGGGCATGGGTAGTGTGGGTTGATGG 6462 36 100.0 41 .................................... CCGTGATTGGCGCCCCAATTACCATATACAAGTACCATATA 6385 36 97.2 28 .....A.............................. GATGGTGCGTGGCCGCAGTCATGCCCAA 6321 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 99.5 29 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : AGCAGGCACCAGCCGTTCACGTAGGTGCCGTCGGCCATGACCACGCGGTGCACCACGCCATCAGGTTCGATGCGCGGCTCGAGCCGCCAGCACCAGTCCACGCATTTTGCGGAAGTTGCGCGCGCTCTCCGGGCGTTTGCGCTGCGGCGCGGCCTCGAGCAGCCAGTCCAGGAACTCCGCCAACTGGGTGCGGCGCCGTTTGGTGTTGTTCCTGGTGCCGGCGGTCAGCCTGCATCCATCGCACTGCCAACGCTGCCGGCCCATGCGGTCGTGCCCGTTCTTGCGCATCGGCGAGTGGCAGACCGGGCATTTCTTCGCTTGCTTCGAACGTGTCCTCATGACACACATTGCACACGAAACCACGCAAGCAGATGGACACCGCCATCCGCAACAGGGCGACACGCTTACTGCCACAAAGGCAAACCGGAGTCTAAATCAATAACTTTAGTTCCTATATGCCCTAATTTCCAGCGCGACCGCGAGGATCACACCGAGGATGG # Right flank : ATGGGTCTACTTATCTCATGTGTCAAGGTTAGTTTATCAAAGAGCGAGCCAATTTGCAGACTCCCCTATCCCGTTGTCTCGATGAAAGTACAACGCCCAATAGATTGGTAATTGTCCAGAAAACCAGTCCGAGGGGATTTTGACCTATGAGAATGATATATTCGCATCTGCTTAGAAGACCAATTGGCCATCCAGATTGATATCGGACACAGCACCGGCATAGGGGCAATAGGTGCGATGCTCGGGTGTAGCATATCCACCATCAGGAGGTAGATCAAGCGCGATATCTGGTTCCCGTTTAATGAGAGTGAGTCCTATTACCTAGGTCAAATGCCTCAAGACGGGTCTGTAGCCGGTCTATTGCATCGCTGGCCTCGCGCAATATAAGCGCAGACTGAAGCCGTGCAGCCGCAGGCGGTCGCATGGCTGGACTGTGGTCGCTTGCTGCTGCCGGTGTCATGGGCAGGCTGCGTGTCCTGTGGCCAGATGATCGGCTCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //