Array 1 3216689-3215620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066126.1 Chromobacterium rhizoryzae strain 32279 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3216688 29 100.0 32 ............................. GGCTCCCAATCGACAGCCAGGTAGCGGGCAAC 3216627 29 100.0 33 ............................. AACGCGCCAGGGATGAGGGAGGTGTTGAAAGCG 3216565 29 100.0 32 ............................. CTGTCTCCCGTCGCTTGACGCACCGGCCCCTT 3216504 29 100.0 32 ............................. CGCGTAGTTCGAACTGAACACGGCTACGCGGT 3216443 29 100.0 32 ............................. CTGGTGGCCAGCGCCACCGCGCCCGGACTCTC 3216382 29 100.0 32 ............................. CGCTGGGCATCCAATGGACCAACCTGGGCGAC 3216321 29 100.0 32 ............................. TCGCGGCGCATGTCGATCACAGCCTGCTGATA 3216260 29 100.0 32 ............................. CCCGCTCATGGCGGGCTTGTTTTCTCAATGCC 3216199 29 96.6 32 ............................T GGGAAGAGGACTTGCAGTGGTCCTCGGTGACC 3216138 29 100.0 32 ............................. GTGTGTTGCTGCTCAATCAGCCGCGGGTAACG 3216077 29 100.0 32 ............................. CTGCAAGACGCAAGCGCCCCTTGCTCGTCCTC 3216016 29 100.0 33 ............................. CAGGCAGCTCTGCACCATGCCGACGTCCAAGCC 3215954 29 100.0 32 ............................. ACCCGTCCCAGCCCCACATTACCCAGATCGCT 3215893 29 100.0 32 ............................. ATGATCCACAATTTCTACAAGCAGGCCGACCT 3215832 29 96.6 32 ..............A.............. GTGGCTGGCCACCGCACCAGCGGCGGCGTGCT 3215771 29 96.6 32 ................C............ AACAAGTCCATGGCTAGAGACACGGTCACTCC 3215710 29 96.6 32 .........................G... GATGACTTGCACCGCCTTTTTGATCGTCTGGT 3215649 29 89.7 0 .............T.......G......A | G [3215622] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGACATTGAAACGCTGCTGGCGGCCGGTGGTCTGGACGCGCCGCAGCAGCAGGGCGTGGTGGAAGCCGCTTTCCCTGAGGAGGAAGGGTTGGGAGATGCTGGTCATCGTACTTGAAAACGCTCCCCCCAGACTGCGCGGCCGGCTGGCCATCTGGCTGCTGGAAATTCGCGCCGGCGTTTATGTGGGCGCTTACAATCGCAAGATTCGCGACTACTTGTGGCAGCAAGTGGAAACCGGGCTGGAAGACGGCAATGCCGTCATGGCCTGGCAAACCGTCAATGAAGCCGGCTTCGATTTTGTCACCCTGGGCGTCAACCGCCGCATGCCGGTGGCTTTCGACGGCGCACAGCTGGTTTCTTTTCTACCTCTACCAACCGATGACGCCGTCGAGGCATCGGCCTCATTTCCTGCACCGTGAGAATCCGGTTAGCAAGCGATAAAAGTTGGTGGCTTTTGGGGTGTCATTTTTCGTATTTAAAATCAATCTCTTGTAAATGGT # Right flank : TGCCCGCATCTAGCAAACCCAGCGCGGTTTGTCTTTGGCTACTGCTCGCTTTTTGGCAACAAATTCCTGCTCAAATTGCAAAATTCAAATATTGCTATTGACCAAGCCGGTGTTTTGCGAGTATTCTTGTCGCGATTTTCAAGCGCTATATCTATCGATACCTCAGTTGTCCATACAAGTTGGTCTGCTTTGTTTCCTTATCTATTCCTTGACTATCATGCTTTCAGGCAATTTATTGCCCTTAATCTGAACACCAAGGAGTGAATTATGGAAACTGGTATCGTTAAATTTTTCAATGACGCAAAAGGTTTTGGCTTTATTACCCCGGACAATGGCGGCGATGATCTTTTCGCTCACTTTTCCGAAATTCGCGCAGACGGCTTCAAGTCCCTGCATGAAGGTCAAAAAGTAAGCTACACCCGAGCAATGGGCCAGAAAGGCCCGGCTGCAACCGCGATCCAGCCGCTCTAAGCATTATCGCTGCAATAAAAAAGCCCCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4213905-4215012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066126.1 Chromobacterium rhizoryzae strain 32279 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4213905 28 100.0 32 ............................ CTACATATCCATCCGACCAATGCCCCATGACA 4213965 28 100.0 32 ............................ ATGTCGCATGTCCGGACGCGCGTGACAAACGA 4214025 28 100.0 32 ............................ TTACGTCAAGGTATTGATGCCGCTGACCAGCT 4214085 28 96.4 33 .........................T.. AGTACCGGCTCGTTCACCCCGGGTAACTTCCTG 4214146 28 96.4 32 .................T.......... GCCGGGCGGCGCCGTGGCGCCGATTGTCCAGA 4214206 28 100.0 32 ............................ AGGCACGACACGTAGGGCACCGATGTTTCCAT 4214266 28 100.0 32 ............................ GCGACGTGATCTGGCTTAAGTGTGTCGGTCGT 4214326 28 100.0 32 ............................ ACTATGCAGCGCTGCAAGTGGGGCGTTTGGTC 4214386 28 100.0 32 ............................ ATCCAGTACTGAGGACACCATGAACAGCATCA 4214446 28 100.0 32 ............................ TATGGGCCGAGACAGGCAGCGGCCTGTTTCTC 4214506 28 100.0 32 ............................ TTCCCCGGCTGGATGATGGATCATGCCAGTCG 4214566 28 100.0 32 ............................ ACAGGTGCGATAGCCACTAAAACCCTACAATG 4214626 28 100.0 32 ............................ CCATAAGCCGGGCGATTTCTGGTTGTGCCGCC 4214686 28 100.0 32 ............................ AGATCGTCAACGATGCACTGAATGAAGGCGAC 4214746 28 100.0 32 ............................ AACGGCATCATCAAAGTGCGCAACGTCGCCGG 4214806 28 100.0 32 ............................ GGCTTGAGCACACGCCTAGTCTCTGTCAGCCA 4214866 28 100.0 32 ............................ ACCAACACCGGGTATCAAAGCGCGGCCACCAA 4214926 28 100.0 31 ............................ CGGGAGAGAACTGATCCTGGCGAGTTACCGC 4214985 28 75.0 0 ..........A.C...C.C..AA.C... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAACTCATTGGCGCTAAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAGGTGCCAGTGCCCAGCAGGATGCAACTAGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCCGCGTCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCAGACGGGGGAAAATCGGACACGGCGAGCCCTTCAGGATGGAACGCGACGGCATATCTTGCCATGGGCATGAACGGTGGGACAGCCTGCGCGGACTACCCTTTTTTTCAGCCCCCTGGTTCCGACATTTAAAAACAATGACTTAGCGACAATCTGGAAATTTGGGTCAACGCCGGAGGAATCGCTGCAAATGCCCGCGCCATAAGGACTATGAGCGGTGTAGACTCTA # Right flank : AACGCTCCTGATGGGGCATTTTTCTTGATCTGCCGCCTGAACAAAGCCACTCCCAAAGGATAAAATATGCCAATAAAATCATCAAAGGAGTGGCCGTGGAATACATTGACTACGTCAATCAGGCATCCAAACTGATCTCGCCCCTCACCGCCATCATCTTGGGCGCGCTGCCGATACTGGCCATTCTGTTCGTGGTGCTGCGCACCCAGTCCTACCACATTCCCTTGACGCTGCTATGGCGCATCGTGGGCGGTAAGAAGGAAATCAACGACAAACTGCTGGCGGACTTTCTGGATGAAAGAAACGCCATCATGAAGTTCCGTACCCTGACCGGGCTTAAGATCCGCACCAAACAAGAAATGCTGACGCTGATCCAATGGGCGGCCAAGCACAACGAGGATATCGACGACATCAAACGCTGCGGGCATTACTTCAAGCTCAGCGAGCCCGGCAATATCACCTCGCCCAATAGGTTAGGCAGCATCGCCCTACTGCTAGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4225695-4226626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066126.1 Chromobacterium rhizoryzae strain 32279 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4225695 28 100.0 32 ............................ GATGAGATGGTCGACGCTCTTGTCGACACCAT 4225755 28 100.0 34 ............................ AGGCAGCTTGTTTTTGACGATGCGCCAGTCTGCT 4225817 28 100.0 32 ............................ ATTGCGTCGGCACGCCGCAGTTGCTTGCCCTT 4225877 28 100.0 32 ............................ TGCTGGTTCTACGGCCCCTACGGCTCAAGTTA 4225937 28 100.0 33 ............................ TTGTAGGTTTTGGCGCCGGTCTCGTCGCTGAGC 4225998 28 100.0 32 ............................ AGCGTGTACGGCGCGCCGGGCAGCAGCTGGAT 4226058 28 100.0 32 ............................ ATCATTGGAGCTATGCCAAATCCTATTATCCC 4226118 28 100.0 32 ............................ TAAACGAGCCGGCGCGGATGTTGGCCGGGCCA 4226178 28 100.0 32 ............................ AACAGGAGCGAGACAGCTATTAGCATGCTCGG 4226238 28 100.0 32 ............................ TGATCGACGCTGCGCGCGTCATTGGCACCAAG 4226298 28 96.4 32 ............A............... TCCCTGGCAAGGCGTACCGCGCTGCGCATGAT 4226358 28 96.4 32 ............A............... CATGAAAATCGATGTACTGCTGGCGGTCGAAC 4226418 28 92.9 32 ............A.G............. TCACCACGGCCAACGCCAGCAACCCACCGCTT 4226478 28 89.3 33 ............A.G...T......... ACCGCGCCCAGTCTGTCGGCGGCCTTGGCAAAC 4226539 28 92.9 32 ............A.G............. GCGAAGGGCTCACCGTGCTGAGTTCGGTACAG 4226599 28 89.3 0 ............A.G......C...... | ========== ====== ====== ====== ============================ ================================== ================== 16 28 97.3 32 GTTCTCTGCCGGGTAGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTTAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAGCGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGTTTCCCGGACAGCGCCGCCCGCCGGCTAACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAACGTTACCAGCTGCACATCGAGCAGCGCCCAGCCCCGGCCACCCACAGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTCCTGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGAGAAATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : AGCATCCCCAACCCCTCCCCCGCAATCCTTCCAATCACGTTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCATGCTAGATTTTGTTTTCCAAAATCAATAAAGGGCCGGCACAGCCGGCATTCCGCGATGGCATATCCACATTTCACCCTCTCCGCGCTGGCGCTGGCCTTGGCAGGGCAAGCCTTGCCGGCGCTGGCCGCCGACGGCAACACGCTGGACAGCGTCACCATTACCGGGTCGCGCATTGCGCGCGCCGGCAAGGAAGGCCCCACCGGGGTCACGGTGCTGAGCGGCGCCGATATCGAAAAACAGGGTTACACCAATGTTTACGACGCGCTGAACAATCTGGCGCAGAACACCGGCTTCACTCAGGGCGCGGATTTCGGCAATACCTTCACCCCGGCCGCCAACGCCATCAGCCTGCGCGGGCTGGGGCCCAACCATACGCTGACCTTGCTCAACGGCCGCCGCATCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //