Array 1 238872-243360 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOWE01000004.1 Larkinella punicea strain ZZJ9 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 238872 37 100.0 39 ..................................... TTGGCCTGAAACTAGGCGAAGTAGGTGCAGTGGCAAAAT 238948 37 100.0 36 ..................................... TCCGGCATTGCGAAGCGGAACCGCTGGCGGAAGTTC 239021 37 100.0 36 ..................................... TCATCTGGACGATTATTGGATTGACTGGGAAGCTAA 239094 37 100.0 34 ..................................... CTGCAAGCTCGGTTTTCCCGTACCGAGGGCTTAT 239165 37 100.0 37 ..................................... TTGATCATAAAACGTGGGGTTAAAAAATGTGAATAAA 239239 37 100.0 36 ..................................... ACTCGTCCTCAGTCAGATTCCGCCCCTCGGCGTTAT 239312 37 100.0 36 ..................................... GTCAGACAATGCGTACCCATCACGGCCCACTCCGAA 239385 37 100.0 36 ..................................... TTGAACTGGTTGGAATGGAGTAATTGAAATGTCCAG 239458 37 100.0 35 ..................................... ATTAACCATCCACAACGTCATGATCGAAAGAATAA 239530 37 100.0 36 ..................................... TGGCTGTTCAAGGAGCGAGACTTGGAACGGGCGCGG 239603 37 100.0 36 ..................................... TGGCCCGGTTCACACAGAAGCCATGAACACCACCCC 239676 37 100.0 36 ..................................... CGGGGAAGGTAAATACCGAGTCGGGTAAGTCGCTGA 239749 37 100.0 36 ..................................... CTCTTACCGCATTGCCCGGCATATTTCCGGTCAGGG 239822 37 100.0 35 ..................................... TGCAGTACTTCAAAATGGAAGCGTTTGAAGCGAGT 239894 37 100.0 36 ..................................... AACCATACGGCGCTCTGCAACTCTTTTTTGGCGGCA 239967 37 100.0 37 ..................................... GCCTGTCATGGTGCGTCAGTGTCAACGACCCGCACCA 240041 37 100.0 36 ..................................... ACACTCACGGGTAACGCCATCGTCGCCAATAGCATA 240114 37 100.0 36 ..................................... TTTCTGGAAACAGGAAGAGAAAGATATGTACAACGA 240187 37 100.0 35 ..................................... CGGGTGTCAAGTGTCCACAACCGCTGGTTGACCCA 240259 37 100.0 36 ..................................... CATCATCGCTTAACAATCACCACCCCAAGCGAACCG 240332 37 100.0 36 ..................................... GGTCCGGCCGTCGTCGCAGGGCTTCAGCATTGCTGA 240405 37 100.0 36 ..................................... AAAAGGAAGAATCTTACCAATACTCAGTCCTTCCCG 240478 37 100.0 37 ..................................... CGCCCAAACTCTTGAACTGGGGGATTATGATGGTGAC 240552 37 100.0 37 ..................................... ACCATGTAAACGATTGAAAGAAACATGAACCAAGCAC 240626 37 100.0 36 ..................................... AAGTGACCTATAATCACTTCCTTGTGCTCCTGAACG 240699 37 100.0 36 ..................................... CGACACGTTTCCGGTCGTAAGTCGATACAACAACCC 240772 37 100.0 36 ..................................... CTCCGCATTGCCGATGAGGATCGACAACAACCTCAC 240845 37 100.0 37 ..................................... TTGAGTCCGCCATTCGGGAGAAAGACGCCAGCACAAA 240919 37 100.0 36 ..................................... CCGGAAACGTCACCTTAGGCAAGGCTGGCGGACCGG 240992 37 100.0 36 ..................................... CCGAATAGGACATCAATAGTATACCGCCCCAAATGA 241065 37 100.0 35 ..................................... GATGCAAGCCTTAGAACTCGACGCCCCCGCCACCT 241137 37 100.0 36 ..................................... TTGAAGCCGCCATTCGGGAGAAAGACGCCAGCACAA 241210 37 100.0 36 ..................................... CGAATGTCTGACCAGACGTTAAGGTAGCTCATAAAT 241283 37 100.0 36 ..................................... AGATGAAGTACATCAGCACATACCAGAAAAACGGAT 241356 37 100.0 36 ..................................... ACCCGACCGGCCACGCAATAATACGCCCGGCTTCAA 241429 37 100.0 36 ..................................... GCCCCCCAAAATACCGGTCGATCAGGCTTTGCTCCG 241502 37 100.0 36 ..................................... CTGTCGAACACGATGCCGTCGATCTCAACTTTCCGG 241575 37 100.0 36 ..................................... TTCGATTCATCGATCACGAACGGCGTTTCCCATCCC 241648 37 100.0 35 ..................................... ATCATCGGCGACCCAATCCCGGCGACAATCCCGCC 241720 37 100.0 36 ..................................... TTTCCGGGCCGTCCTCCATCGTCACCCTGGCCGTGC 241793 37 100.0 37 ..................................... TTATTCTGAGTAGCTGCCCGCTGGATTGGGTGTCGAA 241867 37 100.0 36 ..................................... GTCCAGGGTGAAGGCGACGGCCTGAACATATTTGAA 241940 37 100.0 35 ..................................... CCCTTGCCGGTTTTTTGAAACGAAAAACGGCGGCA 242012 37 100.0 37 ..................................... AGCTGGAGCGCGACCCAGCCAGCAAGCGACAAAAAGG 242086 37 100.0 35 ..................................... ATCTACCGCAATCGGTTGCTATTTCTGGAAAATTC 242158 37 100.0 36 ..................................... CAAAGGTTCTGGAACCGTCGGCGGTAACGCAGTAAC 242231 37 100.0 36 ..................................... CCACGCTGACGATTGAAAACACCAGTGACTTTCTCA 242304 37 100.0 35 ..................................... ACCGTATCGCCCATCGCCAGCTACACCGTGAAACG 242376 37 100.0 37 ..................................... TTAAAGCCTGGGACCAGGCCACCAAAGCGGAACTAGT 242450 37 100.0 36 ..................................... CCAAACACCTCACTGACGGGAAGGGTAAAATCGTGA 242523 37 100.0 36 ..................................... AATCAAAGTGTACTGGTCAACAGCAAGCCGACGTCT 242596 37 100.0 35 ..................................... TACTTTCGTTCCTGGGTTGCGTATGGTGTCGGCCA 242668 37 100.0 36 ..................................... AAAAGTTCCAGGGGTGGCCACGGCATCGTACGCTGG 242741 37 100.0 36 ..................................... CAAAAGTGAATCTTTTAATTGCATGTAGTAGCCAAT 242814 37 100.0 36 ..................................... TCTTACTGACGGTGACTGGTATTTCGGCCCTGACGA 242887 37 100.0 35 ..................................... GTATTCACGGAAGAAAACTTAAAATCGCGGATGAT 242959 37 100.0 36 ..................................... CCGTTTACGGCTGAACCCGGACAGCAGCAACTGGAA 243032 37 100.0 36 ..................................... TCCCAGTGCTTGACAATCGCCACGACCGCCAGCGTC 243105 37 100.0 36 ..................................... GTGCTGTATTTCCGTAACCCCCCCGGCAATGGCCTG 243178 37 100.0 36 ..................................... GAGCATACACCGTTAATAATAGGGCGCTGACTAACA 243251 37 100.0 36 ..................................... GCGCACCAAAAGGGCGGAGTCGGTAAAACGACCCTA 243324 37 97.3 0 .....G............................... | ========== ====== ====== ====== ===================================== ======================================= ================== 62 37 100.0 36 CTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAAC # Left flank : CTGAGTACCATCCAGTTGAAGAAGGATTGAAACAGCATGGAAAAGAAAACACACCCAAAACAGGTACGCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACTATTCCTCCACGAGTGGCTCCAGAAAATACCACGCCCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACAATCGCCAATACCTTTTTCAAGGAATGTCTTCAATTCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACTTGGCCTGAAACTAGGCGAAGTAGGTGCAGTGGCAAAATCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACAATCGCCAATACCTTTTTCAAGGAATGTCTTCAATTCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACTTGGCCTGAAACTAGGCGAAGTAGGTGCAGTGGCAAAATCTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAACTNNNNNNNNNGAATGTCTTCAATT # Right flank : CCGCTGACGATGGTGTATGGTGCTCCCGATTAATTGGACGGTTTTTGGGGAACACCATACCGTAGTTTAGAAGGTGCCGCCATTCGCTGCGATCCAACCGGTTCCTGTTTCCCACGAATCGCCAGACAATCGCTGACTGACGACGTCGTTGTTTACGGCAACGCAAACGCCACGTACCGATCCCCCGATTTTGTTTTGAGTTTGCCACCCCCGCAGGCAATCACCACGTATTGCTTGCCATTGACGGCGTAGGTACTCGGCGAGGCATACCCGGCAGCGGGCAGTTTGGCGCGCCAGCGTTCACGGCCCGTTTTTCGGTCGAAAGCCCGAATCAGTTCGTCGCGGGAAGAAGCAATGAAGAGCAAACCGCCCGCCGTAACCGCCGGGGCGCCGTAGTTGTCGGTGCCCGTCGGGGGAATGCCCTTCGCCACCAGTTCGGGGTATTCACCAAGCGGCACTTGCCAGCGGTGTTCGCCCGTATTCAGGTCGATCGCCGTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACTGAGTACCATCCAGTTGAAGAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //