Array 1 32458-30493 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGS01000037.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E83C1 NODE_37_length_55673_cov_20.0929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32457 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32396 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32335 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 32274 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 32213 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 32152 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 32091 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 32029 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31968 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31907 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31846 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31785 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31724 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31663 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31602 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31541 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31480 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31419 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31358 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31297 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31236 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 31174 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31071 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 31010 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30949 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30888 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30827 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30766 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30705 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30644 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30583 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30522 29 96.6 0 A............................ | A [30495] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50082-48589 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGS01000037.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E83C1 NODE_37_length_55673_cov_20.0929, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50081 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 50020 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49959 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49898 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 49837 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 49776 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49715 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 49654 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 49593 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 49532 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 49471 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 49410 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 49349 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 49288 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 49227 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 49166 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 49104 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 49043 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 48982 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 48921 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 48860 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48799 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48738 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48677 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48616 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //