Array 1 980587-982079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain WW012 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980587 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980648 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980709 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980770 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980831 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980892 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980953 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981014 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981075 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981136 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981197 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981258 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981319 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981380 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981441 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981502 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981564 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981625 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981686 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981747 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981808 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981869 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981930 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981991 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982052 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998211-1000175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain WW012 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 998211 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 998272 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998333 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998394 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998455 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998516 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998577 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998639 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998700 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998761 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998822 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998883 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998944 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999005 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999066 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999127 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999188 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 999249 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 999310 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 999371 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999432 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999494 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999597 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999658 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999719 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999780 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999841 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999902 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999963 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000024 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000085 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000146 29 96.6 0 A............................ | A [1000172] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //