Array 1 11-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJI01000031.1 Streptococcus pseudopneumoniae strain 380_SPSE 111_289_6623, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ============================================= ================== 11 45 97.8 45 .........................................G... ACGGTAGCTTCAGCCTCAGCATCTACTAGTGCAGTAGCTTCAGCA 101 45 100.0 45 ............................................. GCAGTGGCTTCAGCTTCAGCGTCAACAAGTGCGGTGGCTTCAGCC 191 45 95.6 0 ...................................C.....A... | ========== ====== ====== ====== ============================================= ============================================= ================== 3 45 97.8 46 TCAGCGTCAACAAGTGCAGTAGCCTCAGCTTCAGCGTCAACCAGT # Left flank : AGCAAGTGCTT # Right flank : GCAGTAGCTTCAGCTTCAGCGTCAACAAGTGCAGTAGCAAGCGCCTCAGCATCA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCGTCAACAAGTGCAGTAGCCTCAGCTTCAGCGTCAACCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 6375-5876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJI01000076.1 Streptococcus pseudopneumoniae strain 380_SPSE 229_6401_152621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6374 36 100.0 31 .................................... TCTGAAACGTTTGAGTTTGGGGACACGTTAC 6307 36 100.0 30 .................................... CTAACAAGCTAGTAGCAAGTAATATCTTCA 6241 36 100.0 30 .................................... CAAACACTATCTGGGTATACACTAACAATC 6175 36 100.0 30 .................................... AAAACTTTGGTACAGGTGTGCCCCCTTGGA 6109 36 100.0 30 .................................... TGGATGGTCACCGGGAACACTTTCAATCAA 6043 36 100.0 30 .................................... TTATAATTTACCTGTAATTACAAAGAAATA 5977 36 100.0 30 .................................... CGGCGACTGCAGAGAAAGGGCTACCGAGAA 5911 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GACTTGTCAGGAGGTATCTAATGCCT # Right flank : ACATTAAAAGCTACTCATTTTTCAAGTAGCTTTTTTTCTTATTCAAGTTTACATATTAGTCGTCACAATCCCATTCCCTTGTAGAAAAGCAACACTGCGAGTCCTACGAATAACACTACCGCTCCTAACCTCTGGCTAGTACTATACATCCGTCTTTCTCCTCGGACTGGAAAGATAATTGCTAGAAATGCTCCACCAACTGCTCCCCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATCGCGGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCTGATAAAAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16785-17480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJI01000092.1 Streptococcus pseudopneumoniae strain 380_SPSE 285_17507_440394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16785 36 100.0 30 .................................... GGGGTAGATGTCTGGACGGCTGTTCAAGCC 16851 36 100.0 30 .................................... ATGAAGAAATGGAAAGAATACGTGAAGAAT 16917 36 100.0 30 .................................... ATGTGGCTTCTATTCCATTCGCTACCGCCT 16983 36 100.0 30 .................................... AATAGTATAGGTTAGTAGTGACATAATCAC 17049 36 100.0 30 .................................... TAAGCAATTATCTGATTATATCCAAGTATT 17115 36 100.0 30 .................................... CCAGTTTATCTTTGTTAATGATAGACTTAG 17181 36 100.0 30 .................................... ACCTTGTCCAGGACGTCCCACAATGACTAT 17247 36 100.0 30 .................................... ACATCAAGAGCGAACATACTCACAAAGAGA 17313 36 100.0 30 .................................... AAGTCATACAACGAACGGTCGAATATCCCT 17379 36 100.0 30 .................................... AACTATTGCGACTTTTCTAAAATCCAGATA 17445 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGTCCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAGCCTGACGAGCTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AACTATTGCGACTTTTCTAAAATCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //