Array 1 163169-160821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNR01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163168 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163107 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163046 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162985 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162924 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162863 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162802 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162741 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162680 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162619 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162558 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162497 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162436 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162375 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162314 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162253 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162192 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162131 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162070 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162009 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161948 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161887 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161826 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161765 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161704 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161643 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161582 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161521 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161460 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161399 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161338 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161277 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161216 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161155 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161094 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161033 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160972 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160911 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160850 29 93.1 0 A...........T................ | A [160823] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181291-179676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNR01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181290 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181229 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181168 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181107 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181046 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180985 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180924 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180863 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180802 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180741 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180680 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180619 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180558 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180497 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180436 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180375 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180314 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180253 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180192 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180130 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180069 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180008 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179947 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179886 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179825 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179764 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179703 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //