Array 1 13203-14172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEY010000004.1 Pseudoalteromonas sp. SG43-7 NODE_4_length_161633_cov_6.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 13203 38 100.0 34 ...................................... AGTTGTTTTACTTTTTCTTTAATTTTTTCTAGGG 13275 38 100.0 33 ...................................... CGAAGCCCATACGTTATCGACCGGTCCTTTATT 13346 38 100.0 35 ...................................... CATGACGATTGATGATAATTTCATAGTAGTAATTC 13419 38 100.0 34 ...................................... GATGCTTGGGTCATCCTTTAGTCTTTTCTGTTTA 13491 38 97.4 33 .C.................................... TCAGCTTTCTCATAATCACGACGTTTGAATAAC 13562 38 100.0 34 ...................................... TCATTAGTTCATTCGTTAATTAATGATACCGATG 13634 38 100.0 34 ...................................... ACATGAAGCCACTAGTAAATCCATCATAGTTAAC 13706 38 100.0 33 ...................................... GCAACTGTTGCACCGATAACTGCACACGTCGTT 13777 38 100.0 34 ...................................... GAGAGCAGTTTGTCGATCTCCATGAATAAGTTTA 13849 38 100.0 35 ...................................... ACGTACGCCTGGTTAAAAACTATTTAGCAGCTATT 13922 38 100.0 33 ...................................... AGCGCCGGCAATAGCACCACCGATCACACCTGA 13993 38 100.0 32 ...................................... TGGTCGGGTCAAACTCTAACTTAACTATTTGT 14063 38 100.0 34 ...................................... TCAAATGTTAACTGTTGTGATGCATGTAAGAACG 14135 38 86.8 0 ................................AC.TTA | ========== ====== ====== ====== ====================================== =================================== ================== 14 38 98.9 34 GTCTAAACAGACAACGCCCTGACTGAAGGGATTATGAC # Left flank : AAACCACGCTTAAGAAAAATGGTGCGACTTTGTCGTCTCATGTTACAAAGGGAATGCACTTATGGCTAAGCCTTTATGGATCATTAGTTACGATATTTCATGCCCAAAACGGTTACGAAAGGTACATAAATATTGTGCAACGTTTGGTTGGCAAATGCAAAAATCACTTTATTTATTTGCGTTTTCACGAAGTGAGCGCGAAAAAGCATGCCACCAGCTTACAGAATTAATAAATTTACAGGAAGATAAATTACTGTGCTTACCATTTAATGTACTTGAAGGGAGTTTTCATCACGTACCAGAGAGTCCGTTAATTTTAATACATGACGATCCTAGGTTAGAGGGGTTTGTATATTAAACGTTGTAATTAGTATAAATGAGTGATGTGTTAAAAATCATGGCTTAGATTATGCATTAATAAGGGGTTTGTGCTCACCGTTTAATGCATAATTTTTCACAATGCTTGCTTTATTTAAATCAATGAGTTATAAAAAACACTT # Right flank : AGGATCTAGACCCGTGAACCTGCCTTTGAGCTTACTAAAACAAAAAGCAGAGTAAGTTAACTCTGCTTTGCTTTTAGTTTCAGATACCCTTTATGCCTTTAAAGCTTTAAGTGAATATTCTCTGCTGCTAGTTTTAAACCCTTATATTCAAAGCGTGTTCGCCCATTATCTTCGTCTTTTGCTGTACTTACGGTCACAATTTGATAGTACTCAGCCAACCGCGGCCCTAGGTCATCTTTAATGGCTTGATTGGTTTCTTTTAATAAACGATCCCATAAGTTTTTATGAATTTTAAATAAGTCTTGCTGGTCGCGATCGGGCTGTGTATTTGAATAGAGGCACTCTGTCTTTTCATTACTTTTTAAAAGCCAATTATTGCGAGTCGATATTTTAGTGTATGCAGTCTGTTGTTGCTGCTCGTGCTCTATCATCTTGTATACAGCGTCATTCGCTTGCTCGAATAGCTCATCTAATGTCCAGCTGTTATTCATAGTCACTTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAACAGACAACGCCCTGACTGAAGGGATTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 155-2684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEY010000071.1 Pseudoalteromonas sp. SG43-7 NODE_71_length_21055_cov_6.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 155 29 100.0 32 ............................. AAAGTTATTGAGTCTCGCCGTTACAGTGAAGC 216 29 100.0 32 ............................. TGTGTTTCGTTTAGCACTTCGGGCGTGACTGG 277 29 100.0 32 ............................. CGCTTATTACTCATGTATAAATAATGAATGCC 338 29 100.0 32 ............................. AGCACTAAAAACGATGAGATATTCGACCCGCA 399 29 100.0 32 ............................. CGTTGGTGATTTCATGGATATCATTTTAGACG 460 29 100.0 32 ............................. ATATACTATGACGACACTGTATCAGCAGATAG 521 29 100.0 32 ............................. AAGCGCAGCTGTTAACACGAAAGAAGGTGAAG 582 29 100.0 32 ............................. AAATTAAATTACTTTGATACAGTTGCCGATAT 643 29 100.0 32 ............................. TTTCAATACACAGCATTAACGCGCTATTAACT 704 29 100.0 32 ............................. CGGCATCAGCTTTTGTTATCTGCATTTGCTCA 765 29 100.0 32 ............................. TCAATAGCTGTACGCTCAGAAATAAATCCAGT 826 29 100.0 32 ............................. CAGTTTGGCCTAACTGAAAACTCACCAAATTT 887 29 100.0 32 ............................. GCGTTACCGAGTTGTTGAGCGTACAAGTAGTG 948 29 100.0 32 ............................. CGGGTGACACGTTAATAAACAGGTTTGATGGC 1009 29 100.0 32 ............................. TATTTGACATTAGTTCCTGATACTTTAGGGTC 1070 29 100.0 32 ............................. ACAGTGCGACGAGTGTTGATAGTGTCGATATG 1131 29 100.0 32 ............................. GTATATTTTCTTGAAAGCTATTTGTAATAGAA 1192 29 100.0 32 ............................. ACGCCGCATTAATTGCTAATACATTAGTGCCA 1253 29 100.0 32 ............................. TACCCACTTATGTACATAATCATGATTATAGA 1314 29 100.0 32 ............................. TTATCATAGGTGGTAATGAGATAACAGGAGGC 1375 29 100.0 32 ............................. GGGTTTTGTTTTGGTAATTTCTTTAGGTAACG 1436 29 100.0 32 ............................. GGCTTGTTAGCAGCTAACGGCGCTGAGTTTGT 1497 29 100.0 32 ............................. GTGTTCATATTTCAGATAACGTTTTTGCAAAT 1558 29 100.0 32 ............................. CTAAACGTAAGCTGGCGAAATTAATCCAGTCG 1619 29 100.0 32 ............................. CGCGCATTGCACAAAACGTCGCACCTTGGCTT 1680 29 100.0 32 ............................. CAATCATTCATACTTTCGATGTATGCGATCAT 1741 29 100.0 32 ............................. ACTATCAATTGAGTCTGCAAGACTGCCAACTT 1802 29 100.0 32 ............................. CTGATACATTTATACCATCAATTAATACAACA 1863 29 100.0 32 ............................. CAAAAAAACTAGCACAAACACTGACACCACCA 1924 29 100.0 32 ............................. ATGGAAACCGACATCACAAGCGGTGGTGAGAA 1985 29 100.0 32 ............................. AATAAAGAAAAATCAGCGGTTGTTAATGACTT 2046 29 100.0 32 ............................. CTAGCTGAATCGGTTTGAGCATCTTGAAATAT 2107 29 100.0 32 ............................. TATGCTGCCAGTGGGTTTGTGCATTTTGGCAA 2168 29 100.0 32 ............................. ACGTTGAGGGGCTTGATCCTATCACCGCCTAT 2229 29 100.0 32 ............................. TTAAATCATACTCTGATTTAGTTGCTGACTTA 2290 29 100.0 33 ............................. CCTTAGTTGCTTTTCGTTTAATATGCGATTAAC 2352 29 100.0 32 ............................. GTATTAAATTATGTTAAACACAGCACAGTATT 2413 29 100.0 32 ............................. AAGGATTCGCTCGATTTAACATGGAACCGAAC 2474 29 100.0 32 ............................. TCATCGTGCTTACTTGTGCCGCCCGCTTCTTT 2535 29 96.6 32 .............C............... CCCTGCGCTTGTTGCCCAAGCTCTAGCCCTTG 2596 29 96.6 32 .............C............... TAAACGAGTTTAACGCTAACTTGCCAGAGCCC 2657 28 89.7 0 .................-........TT. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.6 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : AGACTTTTATTTTCATGAACTCTTCTTTTGAAATCATGGTGCTTATCCAAAAGCACCAGTGTTAAGTTAACTGGATCAGATTTCAATTGTTGAAGTGGATCATTTTTGCATTGCTGGTAACACTTGAAAACTTTACTGGTTATAGCTGCGGGGTG # Right flank : GGTGAATTTAACTGGCTAAGATTTCACTTGCTGAAGTGATCATTTTGCGTTGCGGGTGACATTTCGCGCTAAAGCACGGCCTACAGTACAGGACATTTGGAGTATTGTTGAATTTATAAAGGGAGGGGTTAAGCAACATGTAATACTTTGATTTGTCGCGAGGTAAACTCGCTGCTACGAATACATGGCTCTAATGCTCTTCATCAAAGACTTGAATTTGATTGCGGCCTGTTTTTTTTGCCACGTAAAGTGCGCTGTCGGCGGCGAGGATCATCATATCGGCGGTGGTGTATTTATCTGGTTTACAGCTGTAACATCCGATGCTGAGGGTGAGGTGGTCGGCTACGTTTGAATTTGGGTGCAGGATATTTAGTTGGCTTATTTGCTGTTGCAGTAATCTGGCAAATTTTAAGCAGTGGGGTTTATCAATGCTGGGTAACACAATTGCAAATTCTTCTCCGCCGTAGCGAGCTGCTAAATCACCTTGTCGCTTACATAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1257-130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEY010000017.1 Pseudoalteromonas sp. SG43-7 NODE_17_length_95449_cov_6.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1256 29 100.0 32 ............................. GTTGCTTTATTACTCATATATTCACAGTATAA 1195 29 100.0 32 ............................. GATTGGTACTTACGGATTATTTTTGTATACAG 1134 29 100.0 32 ............................. CGCCGACACTGGCGGGTTACGAGTTTGACGCT 1073 29 100.0 32 ............................. AACATCACGTTTAAAGCGGGTTATGAAGATTC 1012 29 100.0 32 ............................. CTCGTCGAGGTTTGCGAATATCTCAGCATCCG 951 29 100.0 32 ............................. AGCATTCAACGAATGTATTGTTGTCAGAAGAA 890 29 100.0 32 ............................. GTGTATAAATAAACAGTGGTTGATAATAAAAA 829 29 100.0 32 ............................. ATGGCTGGGTCGGAAGCTGGCTACCTGATTTA 768 29 100.0 32 ............................. TCGTGAACAAGCGCCTTTATTTGAACCGCGCC 707 29 100.0 32 ............................. AGTGCGGCGGCTACTTACATGCAGATTTCTGC 646 29 100.0 32 ............................. CATTTGCCGCTGGCCGTGGTAACTGTAGCGTT 585 29 100.0 32 ............................. GGTTCGTTTTATACTTAGGAACTGCTTGATTC 524 29 100.0 32 ............................. TCGTCACAGAGTAGGATTTCGGACGCTGGACC 463 29 100.0 32 ............................. GTGCACAGGGCAACTTGTCACTGCATGTTGTG 402 29 100.0 32 ............................. CTGCAATCATCACTTGATGAGGAGCGTCAAAA 341 29 100.0 32 ............................. CTCTAGGCCTTGAATTTGTACAATGCTAGTAG 280 29 100.0 32 ............................. TGATAAACCCCTACTACCACGGCGCTAGAATA 219 29 100.0 32 ............................. TTTTATTTTTTGCAGTTGTGATTTGTGCGTCA 158 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : ATTAAGCGCTGGTGAGATCACGCCACCTAAACCATATGAAGATGCCCAACCGCCAGCACTACCAGAGCCTGAATCTATTGGCGATGACGGGCATCGCACTAATTAGGAGTGGATTATGAGTATGTGTGTTGTTGTAACTGAAGCTGTACCACCCAGATTAAGAGGGCGATTAGCTGTATGGTTACTAGAAATTCGCGCAGGTGTATACGTTGGTGATGTAGGTCGAAAGATTAGAGAAATGATTTGGTTTCAAGTCTCTGAGTTGGCAGAACAAGGAAATGTGGTTATGGCGTGGGCTACAAATACTGAATCGGGTTTTGATTTTATTACTTATGGTAAAAATGCACGGATGCCTATAGATTTAGAAGGATTAAGGCTGGTCAAGTTTACACCAGTAAACAACGAAACATTAAGCTAAAAATAACTGTTACGCTCTTTAAAAATTTGGTAGATTTGAACTAGCTGTTTTTATTTATAAAAAACAAGCATATACTATTAGA # Right flank : GCTTGATGTCAACAACAACCGAAAAGTGATCCACTCCACCATTTGAATAATGATCCACTATTTATTAAGGTTTTCCATTAATCCGGCTTGTTTCTTTTCTTTGATCCTATAACTTTCCCCCTTAATTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55782-55634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJEY010000017.1 Pseudoalteromonas sp. SG43-7 NODE_17_length_95449_cov_6.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55781 28 100.0 32 ............................ ATGCTATCAGGCATACACTTTAAATTATAAAC 55721 28 100.0 32 ............................ ATAAAATGCACCTTAGAGCATATTTGCAATTA 55661 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTTACTGCCGCACAGGCAGCTTAGGTG # Left flank : GATGCACACAGAAAGTATGTTTGATTTTTGATCTAAAGCAAATAGTTCAGGCAGAAAGGGAAGTCTGTTTGTGAGCCTCTCAGTTAATTTAAGATTAGCAAACTCAAAGTGAATACCTTACATAGTTAAACTCACCTTCATGTAAGAATAGACCCCGCACCATGTTTAGCTCAAAACAACGTACACATTTTTTCAAACAATGTAAATATGTACTTGGTGCTGCTGATAATCCTTATCTAGATTTGTTCAGCGGTTCAACAGAACAAGTGCATCGCAAATTCTTTGCGTTTAGTGATTTAAAAGATAAACCTATTGATGGTAAGTTTGATTCTTATGGATTAAGTAAAGTTGCCACGATACCTTGGTTTTAACCCTTTATTTTTTCTCTTTAAAATTTTCTATAAAAACAATGGGTTATAACATATCGTTTTTGATAAGGTAAAATAGTAATATTTAACCTAATGGCTTGTTGTAACTTATTTTTATGCTGATATTCTATA # Right flank : ACGAGGGACCGACAAAAATATCGGGAATATTTTGGAACTGCGAAGCAGACCTTTATGGCGAAGGGCAGGACGCCTAAAGTAAACGACATATCTAATAAAGAGTGCAGCGCGAAGAAGTGAGGTCATGGCAGATTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGTAATGACCGATGTAACCAAGCTCCATGGACGGATTGTTAAACCTTTGGTTTATTTGAAGTACTGTCGCGCCAGCAAGCTTAGCGCCTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGGAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGATCTCCTACAAGCCACACTACTGATGTTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGTTACAAATTATTTCATGGTTTTTCATTTACCCTCACGGTCTGTTTTTTGTGCAAAAAATCGTTAAGTTCTAGGTAAATGATTTGCAGAGCTGCATTTGTATGTGCTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //