Array 1 9993-10806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOV01000052.1 Porphyromonas crevioricanis JCM 13913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9993 36 100.0 27 .................................... ATCCTGAATATGAAACTAATAGAAATT 10056 36 100.0 29 .................................... TTGATGAGTTCTGCAAATTTCTCAAGAGA 10121 36 100.0 28 .................................... AGAGAGGCGTAAGTCTTAAATCCTGAAA 10185 36 100.0 30 .................................... TCGAAGACGTTGTAGCAGAATACGAAGACT 10251 36 100.0 29 .................................... ATAGAAACATCTGCAAAGCCAGATCGCTC 10316 36 100.0 30 .................................... GCTTACGTCCTTGCCACTATTCGCCTTGAA 10382 36 100.0 29 .................................... TCCAAAGCCGATCGAGTCTTGCAGCCTGA 10447 36 100.0 29 .................................... AAATATGTCGTTTCAGGCGAATATGGGTC 10512 36 100.0 29 .................................... ATCGAACGTGGACTAACAAAGCCTGAATG 10577 36 100.0 28 .................................... AGAAAAGGTTCGTGCAAGGAGATTTGCA 10641 36 100.0 29 .................................... TCACTCTTACTTATGATGATGCTATGTTG 10706 36 100.0 29 .................................... GATATCAAGAACGACTATTTGAAGCTAAG 10771 36 88.9 0 ..........................C.A...CA.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 29 GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Left flank : TTGTTTCATGCAGAAGAAATCTGTGAAGAAGTACCCTCAATTCCTTATTTAATATGCTTATTATCAGTTATGACATTAGCAATGACAAACTCAGAAGTCGTTTCTCAAAGATGTTGGTGAAGAATGGAGCCATTCGTTTGCAATATTCTGTGTACGAGGTTAATAATACCAACAGAATGCTTGAGAACTTAACTATAAAAATCGATGAGCAATTCGCGAGAAAATTTGAGGGAGGTGATAGTGTGATTATTTTTGACGTCTCTTCCGTAAAGTTGAAGAAATATGGCAATGCAATCCATCGAGATGCGGATGTCGTTTTTCTCTGAATACAGACCTGGGTCTGTATGTTTTATGTCAATTTGCTGTAATTCTCTGTTTATGAGAACTATAGGGGAGCTTTTCTAGCTTTTTTCTTAGGGAGAGGGGAGAAAGAGATCTTTGATATTATTCCATAAATAATTGGTGGATACCAAATTATATGCTACTTTCGTCAGGGCAGA # Right flank : TGCAATGGAAAGCTGAAAAGAAGTGCATTTTGGAAAGTTCTTAATACACCTATTTCTTTCGAAATCATAAAAAGAGGCTGTGTCAAAATTCAATTTTGACACAGCCTCTTTGTTTATTATGTTATGGGGAAGCAGTTTATTGCAAATCCATTTCGGAGATTAATCGTTTGCACCCGGCATACTTGTCGATAACAAAGAGCAAATAGCGGATGTCGCAGATGATACTGCGTTGATACTCCGGTAGGTATTCGATATCGCCTCCTACACCTTCCCAGTTGCGGTCGAAGTTAAGTCCGATCAGCTCTCCTTTTGAGTTGAAGACTGGGCTGCCCGAATTGCCTCCCGTGGTGTGAGTTGTGGCACAGAAATTCACCGGCATACGACCATCACTCATAGCATACTGCCCAAAGTCCTTATTGGCGTAGAGCTGTTTGAGCTTGTCAGAGACATTGTATTCCCAATTGTTCGGGTCTTCTTTTTCCATTACTCCCAAGAGGGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1794-1368 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOV01000020.1 Porphyromonas crevioricanis JCM 13913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1793 30 100.0 36 .............................. ACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGAT 1727 30 100.0 36 .............................. ACGCCACGATCAACGAAAAGCCCATACTCCACAAAT 1661 30 100.0 35 .............................. GGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGG 1596 30 100.0 37 .............................. GCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACA 1529 30 100.0 36 .............................. GAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTG 1463 30 100.0 36 .............................. AAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGA 1397 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : GCACTTTTATGCAAAAGAAGAGGGGCCGCGCATCCCTGCGAAGCCCCTCCGAACGTGAAAATTTGAGAAAATTTGATATGAATAAAAATTTGATAAAATAGCTACCTGTAAAGCAAGTCTATAATTCTACGCAAGCCGACAGCGAAGACAAACACCGCCATGCCAACAAGGCAGGCCGTCGGCGGCAAGAGAAGCCAATATACCGGCACCTGTTGCAGGCCTACCAGGCGACCTGCAACAAGCACAATCCATGCCAACACCCCTAAAAAGGCCAAGAAAACAAACAGGATTTTAACTCCTTCTTTTACTTTCGCCTTATTGATTTTTATGAATTTCATATTTGTATGTTTTTTATTATTCATCAAATGAAACATTGAGCAATCCGACAATTGCACTCTTTTTTACGCTTTCGATCTCGCAATCTCTTGCGTTGAAACAAAAGCGATCAAGCTCCTCTTTTGCCCTATCCAAGTCACTTGCTTGCACAAGAGCAAGCTCGC # Right flank : ATAGGAAACAGCTCAAGTGCTACACAACAGTTTTGAAATAGTAAATCTCCTTACTGTTGGATAGCTTTACCGGTCTCTTGGGGAATAGAAGAAAAAGGGTATAAAGCCCAACAAAACCCCGACCATAGCATATACGAATATCTTCAGGATGGAGTCAAAACTGACACTATTGAGCAATGATTGCAGAAGCATTTCATCTATTGGAGCGGTATCCATGTAAACAATAAGGCTATCGAAAATAGCAAATAATGCTCCTATCAACCCTCCCAAGAATGGCACTAATGTGACAATATTATTCCTCGAGAATTTCATTAGAAAAATAATCCTTATAAATGCCCCAAGTTAATAAACGCATGGTTAATTCTACATAAGATTCGTATCAATTGGGATTGTAACTAAAGAGTTGACATCGGTCTTTAATTAAGACGATTTTGGGTTATCACCTTCCCAAATTAGCTCTTTGTCTCAATGTAGGGCATCGGTACAGAGCGAGATAGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 7123-4716 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOV01000020.1 Porphyromonas crevioricanis JCM 13913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7122 30 100.0 37 .............................. TTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTA 7055 30 100.0 36 .............................. TCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATA 6989 30 100.0 37 .............................. TTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCT 6922 30 100.0 36 .............................. TCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAG 6856 30 100.0 38 .............................. CAAAATCAGGCATACCAAACAGAACAATATGATAGTGA 6788 30 100.0 35 .............................. TGCTCACAGAAGGAACAGACGACGAGGGGGGCTGA 6723 30 100.0 36 .............................. TTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCT 6657 30 100.0 37 .............................. AAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGC 6590 30 100.0 36 .............................. GTGATGATGAAGCAACTATTCCCGATTTTCCTGCTT 6524 30 100.0 37 .............................. CAGACATACCACCTAAAAATTCAGGACAATCATAAGC 6457 30 100.0 36 .............................. GTACTTTGTCAGGAGGTATTACCCGGAGATACATTC 6391 30 100.0 36 .............................. ATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCG 6325 30 100.0 35 .............................. TCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCA 6260 30 100.0 36 .............................. CTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCC 6194 30 100.0 36 .............................. AATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTG 6128 30 100.0 35 .............................. TTTCGCGAATTTATTCGATTCGGATCCCCTATTTG 6063 30 100.0 36 .............................. TGTTTACAGAAGGAACAGACGACGACGGGGGCTGAA 5997 30 100.0 35 .............................. AATGATGGCTCTATAAATCTTAAATTCTCTGATTA 5932 30 100.0 36 .............................. CGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTA 5866 30 100.0 36 .............................. AACGAAATCGATTCTGTTGAGATACAGAAATGTTCG 5800 30 100.0 35 .............................. GGGCAACAAAAATCAAAGCTTGATATATCGCACAG 5735 30 100.0 35 .............................. ACGGAAAAGACTGCGTATAATCAGAGAACTTAAGA 5670 30 100.0 36 .............................. CGATAAGCAGTATTTAGAAATAATCCGTGCGCACTA 5604 30 100.0 36 .............................. AGCGACATATTTTCGCTTTCTGTCATGTTCGTAACT 5538 30 100.0 37 .............................. ATAACAACCTTCATAATAATAGTAATTACTATCGCAA 5471 30 100.0 37 .............................. ACACAGTAGCGTTCACGATAGAAAACTGACGAGACAA 5404 30 100.0 35 .............................. AAGCGCGAAGGAAATCGCCACGCTTCATATCCTCT 5339 30 100.0 36 .............................. GAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATC 5273 30 100.0 36 .............................. TTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGT 5207 30 100.0 36 .............................. CTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAA 5141 30 100.0 36 .............................. AGATATGCAACGGTCGGAACACCTAAATAGTCATGC 5075 30 100.0 35 .............................. TTCGTTCGATGTTCGATAAATCTTGGTGTGAGATA 5010 30 100.0 35 .............................. GTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCA 4945 30 100.0 38 .............................. CTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTA 4877 30 100.0 36 .............................. GGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTG 4811 30 100.0 36 .............................. TGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTT 4745 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : AAATGTATTGGTAATGTATATCATACTCGTATATGACATAGGAGAAAAGCGAGTTGGCAAAATGCTAAAGTTGTGTCGCAAATACCTAAACTGGATTCAGAACTCTATTTTTGAAGGTGAGATATCCGAAGTCAAACTTCTCGAGCTGAAAGGATTAGCCCAAAAGCTAATGGACAAAAGAGAGGATAGTCTCATTATCTTTGCATCAAGACAAGAACGTTGGTTAGAAAAAGAAATAATCGGTAAGGAACGATGCTCCACTGATGTTTTTCTCTGATTAAACTCGGTTGGCTTGTCGAAGTAAGGGAAAGAAAAAAACAGTTCTACAAAAGAACCTTAGGCGATCTTTGAAATATTTGATTGTTAAGCAGATAACTAAGTCGTCATAGTCTCGGTAGTACTCTACAAATGCACTTCGACAACTTTAAGACACAAAAAAACGAATTCTTCTGTAGCAAGAACCCTTTGTTAATAAGGGAAATAACTGGTATTTTTGACGG # Right flank : CTCTCAAAGAGGCAAGCACGCTGCTGCACGACGAAAGCGGACAAACAAAGAGCTTTGATCGCTTTTATCGAGACGTCGCAAAGCTCGACGCAACTTACAATCGCAACTACTTGCAAGCTGAGTATCTATACGCGACAGCAAGTGCCGAGAGCGCAGCACGCTGGACGGAGCAGATGCAAGACGCAGACGACTACGATCTCCAATATCGCACTGTCGGAGACAGCCGCGTGCGCGAAGAACACCGCGCACTCGACCTTGTGACTTTGCCCACTCGTCACGCCTTTTGGGAGACCTACTATCCCCCGAACGGCTGGAGGTGCCGCTGCACGGTTATACAAGTGAGGAAAGGCAAATACCCCACCACCGCGGACGCTGTTGCGCTGGAGGCAGGACAAGCAGCTATCAGCGACAAAAACAAGATTTTCAGAGGGAACCCCGGCCGGGAGGGCACTGTCTTTCCGGAAAATCATCCGTACTACGGAGAAGGCGGTTACGGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //