Array 1 201082-202432 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSDJ01000003.1 Streptococcus suis strain PP536 NODE_3_length_281044_cov_100.341713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 201082 32 100.0 32 ................................ TTGACATGATATAATTACCTCGTAAATGTTTT 201146 32 100.0 34 ................................ ATAGTGTCTCCTTTTGTTTTTGCGGTTAAACCGC 201212 32 100.0 33 ................................ TTTTTCTTAATGCGTTTATTCATGGTTTCCTCC 201277 32 100.0 33 ................................ AAAAGCCTCAAATTCAGACGCCTCACCGCCTCC 201342 32 100.0 35 ................................ CAGTTCCTGCCTGTTGCAATCCTGGTCCTGCTGAG 201409 32 100.0 33 ................................ TTTACATTACTGAACCTGATACAGATATTGTAG 201474 32 100.0 34 ................................ AGGAGTTACATTGTCATCAACACTAAACGATTGA 201540 32 100.0 35 ................................ AACTAAATCAGATTCGGTATAAAAATCATAAGAGT 201607 32 100.0 34 ................................ TGAAAGCGATGAATTTATGGAGCGATGACAACAA 201673 32 100.0 33 ................................ TGAGAGTGATGTTAAAGCTACTGAAAGTGCTAT 201738 32 100.0 34 ................................ CTTAGCTGAATTTCTTGATTTACAAATAGAACAA 201804 32 100.0 35 ................................ TCGTGTACGGAAGAGGAGGATGCGAAACAACTCAC 201871 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 201939 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 202005 32 90.6 34 .........C...C..........G....... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 202071 32 84.4 34 .......T..T..C.A........G....... ATTATACAGGTGGTTTACAGGTTCATACAGGAAC 202137 32 84.4 33 .......T..T..C.A........G....... CAAAAAAATGGATGACAAGCTGGTACTCAACAA 202202 32 84.4 34 .......T..T..C.A........G....... GGGCAGATGTTATGTCACAAGCGCAGACTATACT 202268 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 202334 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 202401 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 94.3 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAATTATCCTCCGTTTATGATATAGGAGCTATATTATTATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TAACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //