Array 1 425-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYH01000132.1 Neisseria meningitidis strain NM1891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 424 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 358 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 293 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 227 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 161 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCCCTTTCTCATTTCGCAGTGCTACAATTCCTGCCAATTATCATACATAAGATTTTG # Right flank : TTTGCGTCTATGGTGTCCTTTGAGATGTCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1-160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYH01000036.1 Neisseria meningitidis strain NM1891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 28 77.8 30 --------............................ CCAAATAGAAATACATACGCCGAGTAATTA 59 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 125 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : TACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCGGTAGCGGCATAAGGTGCTGTAATCGGGGATGCTCAGTTCGTCAAAACGGCAAAACAGGTTGAAATCGATGCGGGTGATGAGGCTGTGTTCGAGTTCGGGATCGGAGAGGCTGTGCCATTGTCCGAGCAGGACGGCTTTGAACATGGACAACAGCGGGTAGGCGGGACGGCCGCGGTGGTCTCGAAGGTAACGGGTTCTTTGACGGTTCAGGTATTGTTCGATCGGTTGCCAATCAATCACCTGGTCCAACTTCAATAGCGGGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 961-2117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYH01000036.1 Neisseria meningitidis strain NM1891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 961 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 1027 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1093 36 100.0 30 .................................... ACGTTGATGACGGATGTGTCGGGTTGCGGG 1159 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1225 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1291 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1357 36 100.0 30 .................................... ATTCTGCCTTTTTACAAGCTCGCTTTCTTT 1423 36 100.0 30 .................................... ATTAGTAAAGGTTTCTGTTGCGACCCGAAT 1489 36 100.0 30 .................................... ACGTTGATGACGGATGTGTCGGGTTGCGGG 1555 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1621 36 100.0 30 .................................... ATATGCCGTTTTCATCCGGCTTGAACATTT 1687 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1753 36 100.0 29 .................................... ATTCTTTCTTTATTTCTGCCATATCGACG 1818 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1884 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 1950 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 2016 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 2082 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //