Array 1 16108-13561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEHN01000003.1 Streptococcus suis strain LS8X, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 16107 36 100.0 30 .................................... TTTATTCACAGGAAATATAGGTGGGGCTAT 16041 36 100.0 30 .................................... AAACAACGGACAGACGGAAAATGACTTGGC 15975 36 100.0 30 .................................... AGGTTGTTGAGTATCGGAATTATCGAGAGT 15909 36 100.0 30 .................................... AATAATAGTATAATAGATACATAAGGTAAG 15843 36 100.0 30 .................................... GCAGACGGAAATCACTCGATTGCCGAGAGC 15777 36 100.0 30 .................................... AAGCCTCTTGGACAATAGATAAAATCGCGG 15711 36 100.0 30 .................................... GAGTGTCTCTGATGGTGTGATTACAATCCA 15645 36 100.0 30 .................................... ATGATGCCAATGATAAGCCCATAGAGTGCT 15579 36 100.0 30 .................................... GGGTCATGTTAGGGATGACACAGAAGAATA 15513 36 100.0 30 .................................... ATCGTACACTATTCCAGCAGCACCTCCATA 15447 36 100.0 30 .................................... TTGTAGTGAAGCCTAGCGGAAATATGACTG 15381 36 100.0 30 .................................... AACTGCTGGATAGTTTGGAACTTCTTGGGC 15315 36 100.0 30 .................................... ATGCCAAAGCCAATTATCGTATCAAGTAAG 15249 36 100.0 30 .................................... AATGGGTTAAATTAGTAACGAGACCCCTCA 15183 36 100.0 30 .................................... GTAATGCTACCACACCTAATCCTTGTGATT 15117 36 100.0 30 .................................... CTCAGTAGTGGTAGTTTGAGTAGTCACTTG 15051 36 100.0 30 .................................... CCTTATTTTCGGAGTTAGGCACCTTGTTTT 14985 36 100.0 30 .................................... GGCAAAATAGCAAAAACCCTCAGCGTTTGC 14919 36 100.0 30 .................................... CTCAAGAATATAAGAATCAAGCGGGTTCTA 14853 36 100.0 30 .................................... CACATTACGAATAGTTAGATAAAGGTCTGT 14787 36 100.0 30 .................................... TGGTCGCCGCTTTCATTATTGATTTGGTCT 14721 36 100.0 30 .................................... TGATGGAAATTGTCAGCAATTTTCTGTGCG 14655 36 100.0 30 .................................... AAATCTTGGCAAGACAAAGTTGCTAAATAT 14589 36 100.0 30 .................................... CCTTCATTCCGACTACTAAAATCATCATAG 14523 36 100.0 30 .................................... AGTATATGGAAAAAACATTTACCTAGTAAA 14457 36 100.0 30 .................................... AGACGCTGTTGTATCTGAGGTTGCTAAATA 14391 36 100.0 31 .................................... ATATTGGCGGGGCAATTAGTAGCGGTATTAG 14324 36 100.0 32 .................................... AAAACATACTTGTGCTTTCTTATTCTATTATA 14256 36 100.0 30 .................................... CCGATAGTGTGCCGATAATCACGTAGGACT 14190 36 100.0 30 .................................... TAATGCGGTTGATTTTATGCGAAATTGGGA 14124 36 100.0 30 .................................... AGCATTTGAAACATAATAATCTTGGAACAT 14058 36 100.0 30 .................................... GAAAAGCCATCACCATATCATCAATAGAGT 13992 36 100.0 30 .................................... CCCAACGGGCTTTTCGGAATAAATTGCTTA 13926 36 100.0 30 .................................... AGCATTGGCGTTTGGTATTAAGATGATGGT 13860 36 100.0 30 .................................... TACTGCCTTGCTTGGATATTTCCATACCGT 13794 36 100.0 30 .................................... CCACAACCTCGCCGATTGTTCGCATGTCTT 13728 36 100.0 30 .................................... GCGAACTTAATCATATCTTCAGCGGTTAGT 13662 36 100.0 30 .................................... CACCCAAGGAACAGCAAGACCAGCTAATGA 13596 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 39 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCATATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGATAAAAAATAGTCTACGAG # Right flank : GTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTAGTTATAACAGCAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //