Array 1 242557-243560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQV01000003.1 Salmonella enterica strain BCW_3994 NODE_3_length_369375_cov_2.92225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242557 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 242618 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 242679 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 242740 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 242801 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 242862 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 242923 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 242984 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 243045 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 243106 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 243167 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 243228 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 243289 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 243350 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 243411 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 243472 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 243533 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259830-263093 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQV01000003.1 Salmonella enterica strain BCW_3994 NODE_3_length_369375_cov_2.92225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 259830 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 259891 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 259952 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 260013 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 260074 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 260135 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 260196 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 260257 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 260318 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 260379 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 260440 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 260501 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 260562 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 260623 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 260684 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 260745 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 260806 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 260867 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 260928 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 260989 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 261050 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 261111 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 261172 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 261233 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 261294 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 261355 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 261416 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 261477 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 261538 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 261599 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 261660 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 261721 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 261782 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 261843 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 261904 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 261965 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 262026 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 262087 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 262148 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 262209 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 262270 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 262332 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 262393 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 262454 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 262515 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 262576 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 262637 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 262698 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 262759 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 262820 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 262881 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 262942 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 263003 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 263064 29 93.1 0 A...........T................ | A [263090] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //