Array 1 1082553-1080878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015414.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 1082552 28 100.0 32 ............................ AAAGTGTCACGCCGTTTTATCTTACATGCCAC 1082492 28 100.0 32 ............................ CTAATAGCAGTGAGTTTAGAGACAGTGAAATT 1082432 28 100.0 32 ............................ GCTAGATGCTGAAATATCAAGCTATACAATGG 1082372 28 100.0 32 ............................ TACGCGATAAGGCGTCTCTTATGCGAACGAGC 1082312 28 100.0 32 ............................ GTTTGCGCCAGCTGCCTGACGAGCAAATTTGC 1082252 28 100.0 32 ............................ AATTATCTGTGGAATACCAGAAACAACACCGT 1082192 28 100.0 32 ............................ ACTAGTAACCGAGTCACCTAAAACTGTACTTT 1082132 28 100.0 32 ............................ TGTTAGCACTGCAAAAACGGTGTTGCATTTGA 1082072 28 100.0 32 ............................ CTAACTCACTACTATCACGCCCAGCGTTCTCT 1082012 28 100.0 32 ............................ GAACTGAACGAAAAGCAGTTGGCCGATCTCAT 1081952 28 100.0 32 ............................ TTTAAGACTTACTTTTGCTTTCACAAAGTTAC 1081892 28 100.0 32 ............................ TAAGTCCATAACTATCGTGTATGCTCGGCCTA 1081832 28 100.0 32 ............................ CCACGACATTGGAGATATGCCAAGTTAAAACT 1081772 28 100.0 32 ............................ TACTAAGCCCATTTTGATGAGTACAGGCACGG 1081712 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 1081652 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 1081592 28 100.0 32 ............................ CTAAAGATAAAGTACTCAAAAGTGTTAGCTAC 1081532 28 100.0 32 ............................ TAACATTTTTGTGGGTGAACTGATCAGTCACC 1081472 28 100.0 32 ............................ CCACATGCCTTGCATCTGTTGAAACGTATCTT 1081412 28 96.4 32 ..................A......... GTTTACTGAATATACTTACGACACGTTTAGTA 1081352 28 89.3 32 ...........CG.....A......... GTGGGGCGTAACTGGGACTGGAGCTATCAACA 1081292 28 89.3 32 ...........CG.....A......... TATCAGCAAACAGCTAAACGACGAGCATAGAT 1081232 28 89.3 32 ...........CG.....A......... AAAACATCAATTTCTTTTGCAGTGAGGTTCAT 1081172 28 89.3 32 ...........CG.....A......... TGCCAGTGGACGATTTAAAAAGCATCTTTTAT 1081112 28 89.3 32 ...........CG.....A......... CAACTCCCAAGCCAGAGTGCCGCATTGCAATA 1081052 28 75.0 119 ..........GA.T....A......GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGTAAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTGTTGGAAATATTCCG 1080905 28 71.4 0 G....T....CC......A.T...TT.. | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 27 28 95.6 35 CTTCACTGCCATACAGGCTGCTTAGAAA # Left flank : TACCAGATGATGTCAGCTATGTGAGTTTCACACGAAAAAACGTTAAAAGCCCTACTAGGATTGAGAAAGATATGGAAGAGCGTGCTAAGCGGCGAGCACAAAAAAGTGGCAAAACGTTTGATGAATGCATGACAGAGCTCGCTGAGACTAAACCTGGTCCATCCGATTTGCCTTTTATCTTTTTGCATAGTCAACAGACTAAGACTCGAACACCAGACACAAATAGTAAATACCCACTCTTTATCACCATGGAAGGACGCGAGGGTAATTCACATGGCACATTTGACTGTTACGGGTTGAACGCGAAGGCAAATGATGAAAATGTATTTGGGTGCGTACCTCAGTTCTAATAAATAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATCTGCATAAAATACAACGAGTTGCGATAGGCTGTTTTTAATAAGGTAAAGCTAGGCTTTTTTACCTTAATAGTCTGTTGCATCTAGTCTTTTTTCATTTATTCTATA # Right flank : TGTATTCGTGATGAGTTGTTAGGTCTAACGTGGAGTTGCTTGTACACGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGGGTTTAAGATAGGTGTATGATTTTATCTAAGTAGTGCATTTTGTTATGCCTACTGAAAGCTACTGCCCCATAGGAAGTGTATTATTGTTAGCCGTGATGAGTCGTTAGGTCTAACGTGGAGCTGCTTGTGCACGCAGTGAAGCTGGATCCTGATATTCATCAGGATAACGGGTTTAAGATAGGAGTTTTGATTTTGCCTAAGTGGCGTAATTTACTATGTCTACTGTAAACTACTGCCATACAGGCAGCTTACAAATGCCGGAGTTGTTTCTACACACACTAAAACCTTTACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCATTATCTCACTGTCTCACTGTCTCACTATCTCACTATCTCACTATCTCACTATCTCACTGTCTCACTGTCTCACTGTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCATACAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1095717-1093228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015414.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1095716 28 100.0 32 ............................ GTTGAAGAAATGGGCGATTTAAGCCGTCACTC 1095656 28 100.0 32 ............................ GCCCATCTAGCACCAGCCTAAAAATGTATTCA 1095596 28 100.0 32 ............................ TCTGCAATCTCGAACTGCTCGTGTCCATGCTC 1095536 28 100.0 32 ............................ TAAATAATCCAATTCTGTATCCGTTGCCTTGG 1095476 28 100.0 32 ............................ AGATACCCCTGCAAACTCGCCATTCATTTCGA 1095416 28 100.0 32 ............................ ATTATGCGATCCCCAGTATTTGGTTCTTAATT 1095356 28 100.0 32 ............................ ATTCTTGGCACTAGCACACCATGCACACACAA 1095296 28 100.0 32 ............................ AATAACGCGACCACAATCACCGTTGCAATTGC 1095236 28 100.0 32 ............................ GTTATCCAGCTCAGTTGTCGCTGCTTGCTGCG 1095176 28 100.0 32 ............................ ACTTCGAGTCTTTGCTGTCTTGCATATCTCGT 1095116 28 100.0 32 ............................ ACAAAAGGATAAGCAAAACGCAGTAACCACTT 1095056 28 100.0 32 ............................ ATAAAATCATGCACATTCATTCATATGGCATT 1094996 28 100.0 32 ............................ GTTCACAAATACATTCGTAACGTCTGTCAGTT 1094936 28 100.0 32 ............................ AACTGGGTTTATAGTCCGACAATCACCAAAAT 1094876 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 1094816 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 1094756 28 100.0 32 ............................ CCGCGTGTTGCTTGGGCAAAGCGAAAACAGCA 1094696 28 100.0 32 ............................ GGGATGAATCACTTGCCGTTCCAAACCTAAAT 1094636 28 100.0 32 ............................ GTATAAGCGCGCAATGTCTAGCGCGCTCAATT 1094576 28 92.9 32 ...........TA............... GATGGTGGCCAAAGGCATTGCGATGGTCGGCA 1094516 28 92.9 32 ...........TA............... TGATGTGGGCAGCACCACACAAGGCACTTGGC 1094456 28 92.9 32 ...........TA............... TAAAAATAGACCCGATCTACAGATTTTTAGAG 1094396 28 92.9 32 ...........TA............... TATTTCTGGGGCGTCATGCACGCTTTGGATGA 1094336 28 92.9 32 ...........TA............... GTGATGAACAAATTAAGGGGCTTTTAAACTTG 1094276 28 92.9 32 ...........TC............... TTCTTAAATCATGATAACGCAAGTCTTCAATC 1094216 28 92.9 32 ...........TA............... GCTGCACGCGTTCATGTTGATAATGGCGCGAA 1094156 28 92.9 32 ...........TA............... ATCACCAACTACTATGAAGCGCGCCAAATGGC 1094096 28 92.9 32 ...........TA............... CAGCGCTTTACTTATGCCAGTGAATGCGCTGT 1094036 28 92.9 32 ...........TA............... GCTATTACTAGATGTTCTCAAATCAAACAGCT 1093976 28 92.9 32 ...........TA............... ATTCTCGAACTAACTCAATCCAACCTTCAGTA 1093916 28 89.3 32 .........T.TA............... ATAATGTGACTAAGCTTGGAAAAGCTATAAAT 1093856 28 92.9 32 ...........TA............... AGTTCAACCAAGAAAAAGCGCAAGCGTTCGCA 1093796 28 89.3 32 ...C.......TA............... ATCATGGCCCGTGCCTATCTTCATTCTATTTT 1093736 28 92.9 32 ...........TA............... TACAAAACACGGCAAAGATAATCTACTCCGAG 1093676 28 92.9 32 ...........TA............... TGCATAAACGTGTCCCGTTTGTGATTGAGTTA 1093616 28 92.9 32 ...........TA............... TAACAGAGCAGACGAACTTATACAGCAAATGA 1093556 28 92.9 32 ...........TA............... TATGCACGTATTTGCACAACGTATGCAAAACG 1093496 28 92.9 32 ...........TA............... AGTAACAAGCAAAGTATTAAGCACTTAGATGC 1093436 28 92.9 32 ...........TA............... TGAATATAAATGGTCAAGAGGAATAGCAAGAG 1093376 28 92.9 32 ...........TA............... TTTGGCAATTATTGCCTCAACGATATTAGCCT 1093316 28 100.0 33 ............................ CGTGCAGCATTCAAAACACTGATGACATACCGA 1093255 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 42 28 96.0 32 CTTTACTGCCGAGCAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAAGGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGACAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGTTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTGTCTTTTTTGATTTACTCTATA # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTTCAACTCTGTACTAGCTTTGTACATTCCTTCACTACCCTACAGGCAGTTTAACGTATTCGTACAGAATTGTTAGGCCTAACGAAGAGCTGCTTATGCAAAGCAGTAAAACTGGATCCTGATTTTCATCAGGATGACGGCGCGTAGAGAGGCGTTGTTAAAGCCGCTTTAGTCATGAATGTTCGATGTAACCAAGCTCCGTAGATGGATGTCAGCTCCGTGCTACCTACACTCACTTACAATGCCATATAAGCACGTACCCACAAGTCTACACTTTCTCACCCCCGTCATTCCGAGCTTGCCTCGGAAACCATTGGCTTTTTCGATGAGAGGCCATTAATAAAGCTTGTAAACATAATTTCTCTTTAAGCCGAGCATCATGGAAATCGAGATCGATTCTCACTGGTAGGTTTGTGAAAAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGAGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1097308-1096619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015414.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1097307 28 100.0 32 ............................ GTAGTAATCCCACCTGCACCTTTAACATCAAG 1097247 28 100.0 32 ............................ AGGATATATCAGCAGATTTGCGTGACGCGAAC 1097187 28 100.0 32 ............................ AGTAGAGAAACAGACCCATGCTGTGCGATTCT 1097127 28 100.0 32 ............................ TAATTGTTGTGTTTGTGCCGTACCAAATTCGA 1097067 28 100.0 32 ............................ AGACAGCTCAATTCAAAAGTGGAAGACTTTGG 1097007 28 100.0 33 ............................ TCCGCTAAATGGACAGTAAGTTCCTTTTGATAT 1096946 28 100.0 32 ............................ GGTTAAATGGTTTTCAAGTAAGATGGAGGGCG 1096886 28 100.0 32 ............................ ATAAGGGAAATTGACCAGATAATCATACAGAC 1096826 28 100.0 32 ............................ TGTTGTATCAGCAACGAATGAAATGCTTGATA 1096766 28 100.0 32 ............................ TTTATTCTCTCAAGCACAAAAACCTATGTTGT 1096706 28 100.0 32 ............................ ACATGACAAATTCACTGGTTTTATTCCAATAG 1096646 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 CTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTATCTTTTTTGATTTACTCTATA # Right flank : TTTAACAGTCCATGGTCGTTAGCGGCTTTCAACTCCGTGTTGGAAATATTCCGGTTCACTGCCCTAAGGCAGTTTAATGCATCCGTGATAAAGTGTTGGTCTAACATGGAGTTGCTTGTGCAATGCAGTGACAATGGATCCTGATATTCATGAGGATGACGAGTGTAAGATAGTGGTTTTTTCCTCAACAGATTGTTGTAACTTCACTTTTTTCATTTATTCTTATTTTACTGCCGTGCAGGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTACAACTCTGTACTAGCTTTGTACACTATTTCACTGCCCACAGGCGGTTTAACGTGTTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1099369-1097856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015414.1 Pseudoalteromonas luteoviolacea strain S40542 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================ ================== 1099368 28 100.0 32 ............................ GAAGCGGGTGTGATTGTGATAAGCCGTGTCAC 1099308 28 100.0 32 ............................ AGAAGCATCCCCTTGCTCTAAAGATTCTAACG 1099248 28 100.0 33 ............................ GTTGAAATATGGCAAGCAACTTTTCTAAACCCA 1099187 28 100.0 32 ............................ GTATCAAAAGCTGCCAAAAGAAGTTCAAGGTC 1099127 28 100.0 32 ............................ TTAAAAGCTTCTATCAGTAACTTTGACATGGG 1099067 28 100.0 32 ............................ TCGCGCATTAGTTACGGTCTTGCCTTCGCGTA 1099007 28 100.0 32 ............................ GCTTATGGTTCGGCCAGTCTTTCGGTCAATGC 1098947 28 100.0 32 ............................ AGCATGTCATCAGACGAAGCCTTGGGGCTTTT 1098887 28 100.0 32 ............................ TAGCAAATACAAACGCACAAATTAAGCATGGT 1098827 28 100.0 32 ............................ AATTTCTTCTGCAGTTCATCTGCTAGAACCGT 1098767 28 100.0 32 ............................ AACATGAGCTGGATTCAACTTGATGATGCCGT 1098707 28 100.0 32 ............................ AATCAAGGTAAACAATGACTGCCAGCGCGAGT 1098647 28 100.0 32 ............................ AAAATTAAAGAAGAACACGAGAACATTATTGT 1098587 28 100.0 32 ............................ TGACAGTCCATTCAAAGCATATGGAGATGTAC 1098527 28 100.0 32 ............................ AAACTGTTTGACCATGGTACAACTGCATGTGC 1098467 28 100.0 32 ............................ TAACAAAAGAACTGCAGGAGTTAAAGGAAAGC 1098407 28 100.0 32 ............................ TTTGCCGTCTCCGTTCATATCGCTGTCTTGAT 1098347 28 89.3 106 .........................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCCCAGTATTGGAACTATTCCG 1098213 28 85.7 106 ............G............GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCCATGTTGGAAAAATTCCG 1098079 28 96.4 32 ............G............... ACATAACTAAAATGCAGTCGTCTGCTGCAATG 1098019 28 85.7 108 ....................G....GTG ATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCTGTAATAGCTTTGTACACTA 1097883 27 67.9 0 T.........C-......G.T...AGTG | C [1097859] ========== ====== ====== ====== ============================ ============================================================================================================ ================== 22 28 96.6 43 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGACATAGACTACTCAAGGAGAAATCATGAAAAAAGTACTACTCGCTGCGGTTAGTTTTTTAGGAATGAGCGTAGCAGCTATGGCGGCAGACACACAATCGACTACTGAAAATCAAACTTTAAAAGTGGATGGCGTTACATCTGCCACATATCCAACGACCCCAACTATTTTAGATCAATTGATCCCAGAAAATGCGTGTCAGGCTCGTTGCTTGTATGAATATGAAGCCTGTAGTAAGTGGGCACCACCTTGGACAGATTGTGAATACTATGTTGAGCGTTGCTTGAGAAATTGCGCATCAAAATAATAGGCAATTTTAAAGGTCGGTAGAGCGGCCTTTTTTGTTTAGCCAGCAGGGTATTAAAAACCCTTTTTATTTTTGTTGAACAGTAGAGTATTTAAAATCAATAAGTTATAAACCACCTAAAAAAGAAGGTTTTTTTTACATTATTTTGTTAGGTGTTTGTATTCAAATGTTTTTGTGTTAGAAATTTATA # Right flank : TTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //