Array 1 25412-29580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDYP010000002.1 Campylobacter concisus strain D2833 contig2_D2833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25412 30 100.0 36 .............................. GTGAGTTTGTGAGCAAGAAAAAACTCGAAAAACTAC 25478 30 100.0 35 .............................. CAAATCAAAAATCTATCTACAAAGCTATCAATATC 25543 30 100.0 36 .............................. ACTGTAACATAGGCTGCCTCTGTATAGCCTACCTTT 25609 30 100.0 36 .............................. GTTGATTGAACTGGCTCATGCTTAGGCTCGAGGAAT 25675 30 100.0 36 .............................. GTTGATTGAACTGGCTCATGCTTAGGCTCGAGGAAT 25741 30 100.0 36 .............................. CAACTGATCTTCCAGTAGCTGGATCAGTCATAATAA 25807 30 100.0 34 .............................. TACCCCAGTTTTTGCGATTGCTGGCGGAATGATA 25871 30 100.0 36 .............................. AACTTTGTATCGGAAATCGTGCAAAATACATCATCA 25937 30 100.0 34 .............................. CCTTTATTGACGTGCATCATAAAATCCCAGTTTC 26001 30 100.0 36 .............................. GCCTTGTAAATGCCTAGCACATAAATAACCTCATCA 26067 30 100.0 37 .............................. ATCAAGTGCTTACTTTTATCGTGCAAATGTTAGATCC 26134 30 100.0 37 .............................. ATCAAGTGCTTACTTTTATCGTGCAAATGTTAGATCC 26201 30 100.0 35 .............................. CTTTGTCATAAAGTGATCGTGCAGAGATGCCTAGC 26266 30 100.0 37 .............................. AATGCGACGTCCGCTATTTACGGCACGCACTACGAGA 26333 30 100.0 34 .............................. GGCTTAGTCCATATACTCCTAAATTTCATGATCT 26397 30 100.0 34 .............................. TCGCTTTACTCTCTCCGCTTGGTCGGTATGCCAA 26461 30 100.0 34 .............................. TCATCAAAAAATAAACTTGAATTTTTAGGTTGCT 26525 30 100.0 37 .............................. CTTGATAACAAACCAAGACAAATGTTTTGGAAATATG 26592 30 100.0 37 .............................. CGAGAGAGTTTTTGCTGTAAAGAAGCTAATCGTTTTG 26659 30 96.7 34 ...................T.......... CACACAAGGATAACCCAGATAAGCACCAGTATGA 26723 30 100.0 34 .............................. AACGTCTAACTGATAAATTAAACGCACCTATTCC 26787 30 100.0 35 .............................. TTCCCGTTTGGAGGTTAAATTATGTCACAAGACAA 26852 30 100.0 37 .............................. TTTTGATTTTTGTATTGTTTCATTTTTTCCTCCTAAC 26919 30 100.0 38 .............................. GCATAAAAAACAACACTTTAATATTCTTTGATAGAGAT 26987 30 100.0 35 .............................. GTAGTAATATAGCATTTTTGAAACTGTGATATTCT 27052 30 100.0 37 .............................. AAAACATCATTATTCAAAACTTCGATCATCGTGTAGC 27119 30 100.0 34 .............................. AAATATAGAGATCAATCTCTACAAAATTTAAAAA 27183 30 100.0 34 .............................. ACTTGATCAAAGATATAATCATCAGCTCTAAAGA 27247 30 100.0 36 .............................. AACTTTTCATCGGAAACACCTTTGTTATTTTTTTGT 27313 30 96.7 34 .............................T GCTGTGTTACAGATGAATTTTTAAAAGATTTATC 27377 30 100.0 35 .............................. TCTAAAATCAAAGAGACATAAGGGTTAAAAAATGG 27442 30 100.0 36 .............................. CCGATAATCTGCGAAAGATAAGCCTTGCTAATCTTT 27508 30 100.0 35 .............................. TATTTGATCGTGGCGATCGTAAAATCACCCAAAAA 27573 30 100.0 35 .............................. AGCATCGTGTTGATGAAGATCCAAATAAAGATAAA 27638 30 100.0 36 .............................. CCGATAATCTGCGAAAGATAAGCCTTGCTAATCTTT 27704 30 100.0 35 .............................. TATTTGATCGTGGCGATCGTAAAATCACCCAAAAA 27769 30 100.0 38 .............................. AGTTTTGGAGAATAATAAATTCGGCATGCGTGGGTTTG 27837 30 100.0 35 .............................. GGGGCAAAGCTCCGCCCTAAGTGATATAATTTTAG 27902 30 100.0 36 .............................. TTTTGGACGCGAGCAAAGGGCTAAGCAAAGAGCAAG 27968 30 100.0 36 .............................. GTCCAGCTTTTGGTGCTTGGCTGGCTTCTTATTTTG 28034 30 100.0 37 .............................. AAGCAGAGTGCGAAGCAAAGCTTTAAGCCGACAAACG 28101 30 100.0 38 .............................. TTTGTAGTGGTAACAATAAGGTTTGTATTCCACTCTTT 28169 30 100.0 36 .............................. AATCAGTGCTTTTTGCCTCGCTAGGGTAAAAAAGGG 28235 30 100.0 36 .............................. AAATTTGTGCTGTTTGCTTGATTGTTTGCTGGCTGC 28301 30 100.0 38 .............................. AAGCACACGCTACAATAAGGTCCGTAGCGTCCTATTGC 28369 30 100.0 34 .............................. CGTTGCTTAGCAGTGGTCTTTTTGTTGATACCAC 28433 30 96.7 35 ....A......................... TTGACAGCGTGGGCGTTGGTGCTGGTGTGTTTGAT 28498 30 96.7 34 G............................. AGTGTATTTACAAAAGATGACGATAAGGACACAA 28562 30 96.7 35 .........................A.... GAAAAAGTATCAGTATTGCTTAGATCAAGCGTAGG 28627 30 100.0 37 .............................. GACTGGTTTATATCCATCCATACTGGGCTTGCGTATC 28694 30 100.0 36 .............................. AGTAAAAGCGCAGGAACAAAAATGGCAACAATTCGA 28760 30 100.0 36 .............................. TGTGCTAGAAAAAATGCCTTAACTGTTTGATCGTTT 28826 30 100.0 36 .............................. GTCCTAGAATTTTTCAAAGTGGTTCAAGCGTGTATA 28892 30 100.0 35 .............................. TAGCTTCATTGTCTTCTTTTTTCATTGCCTATTCC 28957 30 96.7 34 ..........................G... ACAAGCTAAGCAGGCAAAAAAGTTTTATAAGAAA 29021 30 100.0 37 .............................. TACCGCCATAGATACGATTTTTAAACCACAAAAAACG 29088 30 96.7 38 ...................T.......... CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 29156 30 100.0 36 .............................. AATTTGTTTCGGTAATTGTAAGCTTAAATGTTACTT 29222 30 100.0 38 .............................. TATTTGACAAGAGTTATGCAAAACGGACAACAAAGAAA 29290 30 100.0 35 .............................. GGCTTTAACAAAGATATGATAACGCCACACGGCTT 29355 30 96.7 36 ....A......................... TTTTGTTCATTTTTTATCCTTTATGTAGTCGTGTTT 29421 30 96.7 36 ....A......................... GCATTTGCAAATTTTGCATCGCCATAAAGCTTTCTC 29487 30 96.7 34 ...............A.............. TAAGGGTGATAGCGATGCAGTAAATGCAAAAATC 29551 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 64 30 99.5 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTTGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTTCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGTAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTTGGTTGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CAACGCAGAAGCGACAAATTTAAAAGTCAAAAATTTTCAGAGAAAAGATTTAAAATAATAGATCAAATAAACAATAGTTGCTATCTTGCAAAGATCTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAGAAACTAAAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAGAACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAAAACCTCTTTTGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 30789-30426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDYP010000002.1 Campylobacter concisus strain D2833 contig2_D2833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30788 30 100.0 35 .............................. TCCAGTTGAAGGCGGCTTTCCAAATGATCAAAGAA 30723 30 96.7 38 .......................A...... GAGATGGGCTTGGGCTAAGGCTCACGAGCAAGACATAT 30655 30 100.0 37 .............................. CACGCCGTCTTTTTTATGTGGCTCAAAGCATCTTATA 30588 30 100.0 34 .............................. GGGTTTGCTTTAGAAATGTTGTAGGGGCTATGGG 30524 30 96.7 36 ....T......................... CAAGATCTGATAAGTGCGATAGAACAGAGGCTAAAT 30458 30 93.3 0 ........TC.................... | AAT [30434] ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.8 36 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : GGCAAAAGACGAGATGAAAGAAAAAATCTCTGATAAAAAAGATAAATTAAAAAAGAAAGCTTCTAAAACTAAAGAAGAGCTAACTTCTAGCAAAGAAGATGAAACTAGTATGGGTGAAAAAGCAAAAGATGAAAAAGACAAAGTTGTTGACAAAGTAAAAGAAAAGAAAGAAAAAGCTGCTTCAAAAGCTAAATCTAAAAAAGAAAAACTTAAAGAGAAACTAGAGAAATAAAATATTTTAAACCTGCTTGTCTTTACAAGCGGGTTTTATAAATCCATATATTTTTTGTTTTAATTATAATTGACAAAAATTATCACAATCTTCTTTAAATTTCATTGATAGATAATTTGCTTCATTATAATCTTTAGCCAAGGTTTTTTGCTAATTTGTGCTAAAACAGCTGCCATCTAACTTTGCCAACTAAAAATTTATATGGAACTGCCCCGAAAAAACGACTATCAAAAGAGTGATTGCGGTTGTCGCTAATCATATTTGGTGG # Right flank : GAACCGCCGACCTTCTGGTTAAGAGGGTTATGAGTTATTTTTTATAAGTAGCTATTAAGCTACATTTGTTAAAATCTGACCTATGAAAGTTTTAAAAAGTTCGACATTTGATAAGTGGTTATATAAGTTAAATAATCCTATTGTCAAGGTTTCTATATTAAGAAGATTAGAGCAGATAGAAACAAAAGATCATTTAGGGGATTATAAATTTATAGATACAGACTTATACGAACTTAGGTTTTTCAATCGTGGTGGGCTAAGGATATTTTTTACTTTTGATGGCGATGAAATAATTATATTATTAAATGCTGGCGATAAAGATAGCCAAAGCGATGATATTAAAAAAGCAAAAGAGGTTTTAAAGGATTATAGATGAAAGAAGAATTTACAAAATTTAATTTAGAAGACTATTTAACAACTGATGAATTAAGAAAAGAGTATTTAAATCAAGTTCTAGCTGATGGCGATATTGAAGAATTTAAAAGAGCATTATTTTATAT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //