Array 1 10632-11724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGE01000021.1 Geobacillus zalihae strain SURF-114 scaffold_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10632 30 100.0 38 .............................. GGTTGTGGCTCGTTTGATCAATGAATAAGATATAAAAA 10700 30 100.0 36 .............................. CCAATCATTGCATATAGGCCTTTTTCTTGGAATAGC 10766 30 100.0 35 .............................. TACCCTTCAAAATGATAGGTGTTTTTGTTTTGTTT 10831 30 100.0 37 .............................. TCGACATATTGGATAATTACCACAGGGACTCTTCTTT 10898 30 100.0 35 .............................. ACAGCTTTCATTTTCATTTAGCAACAACTCCTTGT 10963 30 100.0 39 .............................. GCAAGAAAATGATTGAATACAAATCGACAGCACCCAAAG 11032 30 100.0 35 .............................. AATTGACAATCATCTTTATTCATTCCTCCATTCAT 11097 30 100.0 37 .............................. TGTGCTTACTTTTAATTCCCTTTCTGAGTTAAACCAC 11164 30 100.0 35 .............................. TGTTCCGGTTGATATTTTTCCTGCGCCCGTCTTTC 11229 30 100.0 36 .............................. CAAGAAACCAAAGCGCTCGCTCCGAAACGAACGGGT 11295 30 100.0 39 .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 11364 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 11431 30 100.0 34 .............................. CGTGAGCAAACGTTTGAGGTGGTTGAGTGTGCAA 11495 30 100.0 34 .............................. CAGCAACGATTGGGATTATGCAACGCGAGCGCAG 11559 30 100.0 39 .............................. ACGGCAAACCCTAGCGCTCCGCCAATCGCAGTGGCCGCC 11628 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 11695 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 99.8 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AGCGCGCTCGTCTTGAGCGTCGAAAAATCGAGCAGGATATGTTGGAGCGAAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCTCTTCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAAGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGCATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCCTTTGTGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGGCGGAACCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACAGGGGTGACGGCGGTGCTGCCGCACGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTTGTGTTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1013-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGE01000024.1 Geobacillus zalihae strain SURF-114 scaffold_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1012 30 100.0 37 .............................. TATCTCCCTTTTCTCTTTCTTGTAAAGCTAAATCAGC 945 30 100.0 37 .............................. ATACAAGAAGACCTAAGGTAGAATGACCAGAATGGAA 878 30 100.0 38 .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 810 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 744 30 100.0 37 .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 677 30 100.0 35 .............................. CGAAAAAAGGCAGTTCTCTGCCGTATAACAACAGC 612 29 86.7 0 ................CA......-..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCTATCTGAAGAGGAGGAAGCAAAACCGCGACACGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGCTGGAAAAGGGAATCCAACAAGGAATTGAACAGGGGATAAAGCAAGGGATGAAGCAAGGGCGCCAACAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGATGGCGAAAGGGTACGATGCCGACACGATCCACGAACTGACCGGGATGCCGATGGAGAAGATTGAAAGGATGAAGGGGTAAGACGGCCCTTCGCCGTCAAGCTCCGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCTGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTGG # Right flank : CTGTACCCGTGGTGCTAGTTGAGCGTTAGAACTCAACTAGCCCAAGTGTAACTAGGGAATAGGCTAACAATATGCCGTCGAGCGCTACTTCAAATCCGATCATGGAATTTGCTCGGATCCCTGTGATCCGGTATTGGTCAACRAGAACCGAGAACACCGTCTCGATCACTTTGCGTTTTTGTTGGATCCATTTCTCCRATGCRTCGGACSAGCAATGTTTCTGGTTTTTTCGAGACGGAGTCCAAAGCGCCATTTGGTACTCTTCGTACAGCCTTTTTTGCAACTCACGGCTYATGAATCCTTTGTCCCCAAAGTTATAGGGATGAGGAATTTGAGTCATCACGCTTTCAGCGGCGATACGATCATGGCAGGATGCTTCCGTTACCACATAGCCCATGGGCAACCCTTGATCGGTCACTTGAAGGTGCAGCTTCAACCCATAGTACCATTGCTMTTTGGAAGCGCAATACCCGATGTCTGCGATCTCTTGAAACCGTTTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 32714-33336 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGE01000026.1 Geobacillus zalihae strain SURF-114 scaffold_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 32714 30 100.0 34 .............................. CGGGTCCGGTTCGCCTTCATAATCGAGAATTCCG 32778 30 100.0 36 .............................. GGTTTTAGCGACCCAGTTACGCAAGTAGAACACATT 32844 30 100.0 35 .............................. GCAAGTAACCGATTTATAACTGGCTCGACTTCTTC 32909 30 100.0 35 .............................. TACACTCCTTTTATATTTTGTTTAAAAGTAATAAT 32974 30 100.0 39 .............................. TTCTTTTTACTCTTTCTGTTTCAAAATAACCATCGATGT 33043 30 100.0 37 .............................. CGGTGATACGGTAAAAATCAATAACATTGGCCGGATT 33110 30 100.0 35 .............................. AATAATTTGCATGAGTTCCTCATAAGTCAGTTCAT 33175 30 100.0 37 .............................. TTTCGTCAAACCACTCATGGATCGCAAGATAATCCTC 33242 30 100.0 35 .............................. CATAAGTAGTTAAATAAAACCCATAGCCGGCTTTT 33307 30 80.0 0 ...............GC.T....C.A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGAAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGTCAAAATCCTACAGCCAACACTGCTGAACGATATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : CACTATACAGTACAGCACAACTTTTTCTGTTCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 41486-41782 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGE01000026.1 Geobacillus zalihae strain SURF-114 scaffold_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 41486 30 100.0 37 .............................. ACGAAGAACACATCGAAGCAGCGAAGCAATTTGTCGG 41553 30 100.0 35 .............................. ATTCATAAATTTCATCGATTGGAAAGAGTTCATAA 41618 30 100.0 36 .............................. CATTTTGACTAATAAATAAGCGTAGAAAGGTTCTTT 41684 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 41753 30 90.0 0 ................C....A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGAACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTAAACGGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTACGCACATGGTTTGGG # Right flank : CTAGAGGAACTGAAACTATTCCTCGCCTCAGCTGAACCGTTGCTGGGTTCCGCTTGTTTTACGGCTCCACATAGGAAAAGGACAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGATGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTAAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17139-18364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAGE01000030.1 Geobacillus zalihae strain SURF-114 scaffold_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 17139 30 100.0 37 .............................. TTCGTACAATTCTAATGCTTCCTCGTAATCCATATCT 17206 30 100.0 38 .............................. ACTGCTAACCCTTCACGATGAAGGGCTTTTTTATTTGA 17274 30 100.0 35 .............................. TAATCACATTTTCCGCATGAACGTTGTCCATTTTT 17339 30 100.0 38 .............................. CCTCGCAAATTGAAGCAATAAATCGTAGTAAACTCTTC 17407 30 100.0 34 .............................. AGCGTATTATCGCACGCCTGCGCCCCTCGCCCGC 17471 30 100.0 36 .............................. TCGATATGATGGACGGTATTATATTCAGGGGTTTGA 17537 30 100.0 36 .............................. AGAGTAGACGGAAAAGAGAGAAGATAAAAAAGGCTC 17603 30 100.0 36 .............................. AGCGTGAGAATGAGTTTCTCCTCTACGTTGGGGTGC 17669 30 100.0 36 .............................. ATTGATGAGGCGGGGATCATGTTTAATAGTCGTGAT 17735 28 93.3 36 ................--............ GAAATGGGGAAAAGGGTGTCATCTTTGCGATTGACG 17799 30 100.0 37 .............................. TTGCGCGTGAGGCTGAAAAGTCGTTGGAGATGGTGGA 17866 30 100.0 35 .............................. AAAAATGGAATCCATTGACCGAGGAACTGGAATTG 17931 30 100.0 37 .............................. AGTCCGATAGTCATTGTTTTTCCTCCTTATCTTCGGA 17998 30 100.0 36 .............................. TCGGACGATCAGAAAAAGAAATGGATGGAAGTGATC 18064 30 100.0 37 .............................. TCGAGAGGAAGAAAGAGCATGACAAGCTCGTCCGACT 18131 30 100.0 37 .............................. AATGAAGCGCGCCTCTCTCACTTCCAGCGCCATACAT 18198 30 100.0 38 .............................. ACGGCTTCAAAAAACGGGTCTACCCACGCTTCTCGTTT 18266 30 100.0 39 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCGCCT 18335 30 93.3 0 .....................A.......G | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.3 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATGTTCTTGCATGAGGCCATTCTCCTTTGGTATGGCTAGCCCCGCTTTCGTTATGCAGATGACCCGCCAGGCAGACCATTTTGATGTTGGCCCAAGTTTATCTATCATCGAAGGAATGGAACAGGGATTAAAGCAAGGAATACAGAAAGGAATAAGACGAGGGATGAAAAAAGGGCGTCAAAAAAATCGAGGAAGGGAGGCTCGACGTGGCGAAGAAAATGCTGGGGAAAGGGTACGATATCGACGCGATCCACGCACTGACCGGACTGCCGTTTAAAAAGATCGAACGGATGAAGGAACAAACCTTTCTCCGCAACCCTATATTCCCATTGTCGTCGACCCCCAATCGCGCAAAAACCCCTGGGGATCGACGACAATGTTCCTTTGCTTCAAAATCCTACAACCATCAAGTCCGAATATTATTGACAGAATATTTGAAACGTGATACCCTAGAAACAGCCGAAAGGGGAAAAGCTTGATTTAATGCGCATGGTTTGG # Right flank : GGTTTTGTTGTACCCTTTGCAAAAGATTGATGATCGATTGCGACGCGGAATCTGTTGTCTATGACCGCATGGGCGTGGTGTCGCGTTTGCTTGACCCATTCATAGCGAATTCACTTGATGGAAAGGGGCAACGCTCGATCACGATGCGTGCCTCTTTTTTTCATCATTACTAGTGAAGAGCTTTTTCTGGTCGCTGTGCTTCCCCGTTTGGATTTCGAAACATCAAAACCAAAAAGACCCGCCCGCTTGTCTTGGCAAACGGACAGGCCTTTTCGTCGCGTTTTTCGTTTCCTCTTGCTCGACGCCTTGTCGATTACGCTCTTGCCATGCCGATCGAGGCGTCTGGCGTTTTGTAGGATGAAGCATCGTTGTTTTCGTCTTGATGGTTGTCGCTTGGCGTCGTCGAATGGTCGTCAGCCGATGGTTGTTCATTCGCTGGGTTTTCGTCTGTCGGCGCTGTTTCGTCACTCGGGATCAATTCTTTTTCTTTGCTCGTGGCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //