Array 1 4873-4298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTY01000010.1 Bifidobacterium longum strain AF26-10 AF26-10.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 4872 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 4811 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 4750 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 4689 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 4628 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 4567 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 4447 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 4387 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 4326 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : GACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATGACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGTC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7158-6389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTY01000010.1 Bifidobacterium longum strain AF26-10 AF26-10.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 7157 29 100.0 32 ............................. CACTGGAGTTCGTGGACATGGACGCGGCCGAC 7096 29 100.0 32 ............................. AACGAGCCGAACAGGGAGCCGATCTTACCCAA 7035 29 100.0 32 ............................. GATATCGTGCAGGACACGAAGTGGTTCGCGTA 6974 29 100.0 32 ............................. CATTCGGCAACGGCGGCAAAATCGGCAAATCA 6913 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 6845 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 6784 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 6723 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 6662 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 6601 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 6540 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 6479 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 6419 29 82.8 0 ............C......T....CG..C | CA [6395] ========== ====== ====== ====== ============================= ======================================= ================== 13 29 98.4 33 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CCGTTTCACGTACCGCTGCACCGGCGAATACGAGCCCTCGTAGCCCTTCTCCGACACGAGTCTGTCGTACACGCGCTTGGCGGTGTGCCGCTGCTTGCGGGGCATGAACCGGTCCGCCTGCAGCCACCCGTCCACCGTCGCCCTGAACGGATCGAGCTTCGACGGCCGCGATACGGAGCGCTCCGGTCCGGGAGAGCAATCCTCCCTCCCGGCGTACTTCGCGACCGTGTCGCGGGCCACGCCCACCTCTTTCGCGATGCTCCTCCATGACATGCCATGCGCGTCAAGCACCCTGATACGTTGTTGTACGGACACCGGTACCGTCATTCCTTTCCTTTCCCGAGAAAACCGAACGGTTTGACTTTCAACTCGGGAAACTAGTCCAGGCAGGACGGGCCGGTGTTCGTTTCTCACCACACGCTGAAGTGGACCAGAACCTGCCGCTCACATGGAAGACATCCACACGCTCACACGGCCCACTTTCTATTGAACAGACACAG # Right flank : CGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTACGCGTCCAGTTCGTTCTTGAACTCCTCGTACGAGGCGAACCGGCGGCCGGTGTGGAACTCGTCCTTGAGGTGGCCGAACACCTGCTCGGTGGCGGCGTTGTCGATGCAGTTGCCCTTGCGGCTCATGGACTGGCGGATGCCCAGTTCCCCGAGCCTGTTCCGCCACCAGTCGTGCTGGTATTGCCATCCCATGTCGCTGTGGAGTATGGGATCGGCGCCTTCGGGCAGCTTCTCCTCGAGCATGGCGAGCAGCCGTTGCTGCTGGGCGAGGTCGGGGTGCCGGCTGACATCCCAGGCCACAATCTCCTTGGATCCCATGTCGTATATGGGCGCGAGGTACGCCTTGCCGCCCGCCGCCCTGAACTCGGTGACGTCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16376-9756 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTY01000010.1 Bifidobacterium longum strain AF26-10 AF26-10.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 16375 29 100.0 32 ............................. CTGCTGGGACATAGCAGCGTGGAGACCACGCA 16314 29 100.0 32 ............................. GCGGAATCGGGCGACCATAGACGGCTTCGGCC 16253 29 100.0 32 ............................. TGATTGGCCCTCAGCAGGCCGCGCACTCTGTG 16192 29 100.0 32 ............................. GAAACACGCAAATACGCCGACGCCACCGTGTA 16131 29 100.0 32 ............................. TCCATGACCGCGTTACGCGCGGAACTGCTGGC 16070 29 100.0 32 ............................. TCCACGTTGTCGATGACACCGGTCATGCAGGC 16009 29 96.6 32 ............................T GCGGGAAATCGCAGCTGGTACGCGGTGTGCAC 15948 29 100.0 32 ............................. GACCGGCCATGAAGCCACGCTGCATCCTGTGC 15887 29 100.0 32 ............................. TGCTCTCGTAGCCGACGCACGTGCTCTCACGC 15826 29 100.0 32 ............................. TGGTTTTCGGTTTGCTTTACCCATGTTTTAAA 15765 29 100.0 32 ............................. TCCATTGGAGGACGCCAGCTTTCGGGCAGGGT 15704 29 100.0 32 ............................. ACCACGGGAGGCAACGGCACCCCCAACTGGGA 15643 29 100.0 32 ............................. TCGCCGTTGACGAGCTCCCTTGGATACGTCGT 15582 29 100.0 32 ............................. ACTCCGGACCCCTGCAAATCTACTGACCGTTT 15521 29 100.0 32 ............................. GTCGGGGTCGGCGGCATGTTTGATGGTGCCGT 15460 29 100.0 32 ............................. GTGACACCATCGCCCATGTCGTTCGCGGCCAC 15399 29 100.0 32 ............................. GCGTTGCCCTTCGGATCGGCCTGAAGGTCATA 15338 29 100.0 32 ............................. GGCACGTGGTTTGCGGATATCGCAGAGCAATA 15277 29 100.0 32 ............................. GACGGCAAGTGGGCCACGACCGCAGGCTGCGG 15216 29 100.0 32 ............................. GTCCCATACGACGGGCCGGTGCCACTCGCTGA 15155 29 100.0 32 ............................. TGCAGACGCTGACGAATAATCTTGACCAGCGT 15094 29 100.0 32 ............................. TGCAGGAGACGGAGCATCAGATGGCCTTGTTC 15033 29 100.0 32 ............................. GTGAAGCGGGTGACCGTCCCGGTGGCGATGTA 14972 29 100.0 32 ............................. AAGGATGCCGAAGCCAAGAAGCAGAAGGCCGA 14911 29 100.0 32 ............................. GTCGTACGAGTAGGTGAACGTGGGGCCGGTCC 14850 29 100.0 32 ............................. AAGGCGAACGCGAAGCTGACGGAAGCGCAGTC 14789 29 100.0 32 ............................. GCGAACACGGCAGTCGCCGCCGCACAGGCGAA 14728 29 96.6 32 ............................T GTTACAGTGCGACAAAACGTCTCCCAGTCGCC 14667 29 100.0 32 ............................. TAGTCGTAGATGGCGCGTGTCGCACAGCTGAC 14606 29 100.0 32 ............................. AGCAGTAGTAAAAAACACAGGGCAAAACACAG 14545 29 100.0 32 ............................. GGCAGGGCACGCCAAGCGTGGGCGACGGAGAA 14484 29 100.0 32 ............................. GGAGAAGCCTCAGATGAGTCTTGATTATCTCG 14423 29 100.0 32 ............................. AAACCGGTCAAGCTGCCCAAGATCACGGTGGA 14362 29 100.0 32 ............................. TACTATATATAATTACCAAAAAACAGCCGAAA 14301 29 100.0 32 ............................. TCGGGAACGGCCATCAACCCGATTGATAATAG 14240 29 100.0 32 ............................. CATGTACTCCACGGTGACGGTCTGGCCGCCGT 14179 29 100.0 32 ............................. AAGTAGGCAAAATAGAAAGCAGCAGAGATGAT 14118 29 100.0 32 ............................. GACACGAAGATGCCGAACTATCGCAAGCATTG 14057 29 100.0 32 ............................. GCGTTGACATCGCGGCTGGGGAAGCCGCTGAC 13996 29 100.0 32 ............................. AACGCGTCGTTGAACTTGATGCTGGTCTGTCC 13935 29 100.0 32 ............................. CTGCCGCCGAACGATTTGCCGATTTTCGAACC 13874 29 100.0 32 ............................. GAACCCTTTTTAATCATTCGACCGATGGAGGT 13813 29 100.0 32 ............................. GAAGGTGTCATAATGTCCAGTATCAACAAAAC 13752 29 100.0 32 ............................. TTCTTCACGTAGGGCGGCCATCTGTCTGAGCA 13691 29 100.0 32 ............................. CACCGTTTGCAAGGAGTCCTGTCTGCCGTATA 13630 29 100.0 32 ............................. TACGAGGCCGACCACATGTTTCAGGCGAAGGC 13569 29 100.0 32 ............................. CGTATAGGCCGGTTCCTCGCAACACAGGCAGG 13508 29 100.0 32 ............................. ACCACAGCGGACAATGCGCTCTCATTGGCGCA 13447 29 100.0 32 ............................. CTTTTTGACGTGGTGGTGCTGGAATTGTCCGA 13386 29 100.0 32 ............................. CAACAGAGATGATACACAATGACAGAACAGGA 13325 29 96.6 32 ............................T GGTTTTGGATAGTTCCGCCACGGTCGCTTCCA 13264 29 100.0 32 ............................. TCATCATTACAACACACCTCCGATGCCCGCGT 13203 29 100.0 32 ............................. GTTCGCCACGCTTCCACCCAGTCGGAGGCGGA 13142 29 100.0 32 ............................. GATGCCTGAGCATCGAGAACACCGCGTCATCG 13081 29 100.0 32 ............................. GGGGCGACATTGACGTGTTGACCCAAAACCCA 13020 29 100.0 32 ............................. ACCAAGGTCGAATACGCGGACCTCGTGGAAGT 12959 29 100.0 32 ............................. GTATGTCACAACGGCGGCAGCAACACCGCAAC 12898 29 100.0 32 ............................. TGATGAGGAATGCGGCACGTTCAACGCGCCTG 12837 29 100.0 32 ............................. AAGCGCCCGACATGGCATATCATGGGGTACTT 12776 29 100.0 32 ............................. TTATGGCACCCAGTGCTGGGACTTGTGGGCGA 12715 29 100.0 32 ............................. GTTCCGGGCCGTCTTCGCGGCATGGGCCCCAT 12654 29 100.0 32 ............................. ATTATATCATCGGATACGATTCATTGGACCCC 12593 29 96.6 32 ...C......................... GACGCTGTCCGCTAGATCGGGGCTTCCGGTCT 12532 29 100.0 32 ............................. GAACCGACGAAGAATTCACCGAACGCTATCGT 12471 29 100.0 32 ............................. GGTGATTATGCGTTCCGCAGTTTCGACAAGAC 12410 29 100.0 32 ............................. TGGCGAAGATGTGGGGCAACGCCTTCTGCTCC 12349 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 12288 29 100.0 32 ............................. GACGTCTGCATCTACAGCGTGACGGCTTACTA 12227 29 100.0 32 ............................. AACAATGGTTCGACAAACTGGATGGAGTGGAA 12166 29 96.6 32 ............................T GACCGGAATGTCAATCAGGAACTTGTCAGTAG 12105 29 100.0 32 ............................. TGCCCACGGATGTTGAACGTGCCCCATACACC 12044 29 100.0 32 ............................. CAAATGATGATAAAACTTTTACAGTATCAGGA 11983 29 100.0 32 ............................. ACTGTCGGTATCACCGCCCGTGACGGTAACGC 11922 29 100.0 32 ............................. GACGTGATGAAGGCGCTCGTGGCCCTCAAGGA 11861 29 100.0 35 ............................. AAAAAAGAACCGCCGAAACCCTCAACAAGCTGCAG 11797 29 100.0 32 ............................. CCAGTGGGCGGGCATTCGATGGACGTTCCCCT 11736 29 100.0 32 ............................. CGGGCGGCAAGCACGCACGAATAGGCGTTCAG 11675 29 100.0 32 ............................. CACAGGCTTGCCACGATGTCGCTTATGAAGTC 11614 29 100.0 32 ............................. GCGTAGGCGTCTACCACTTCGCGCACACGGAA 11553 29 100.0 32 ............................. CAACCGAAGGCATCGGATACGTCAACCCCGAT 11492 29 100.0 32 ............................. CACTACACGCCGGGCCGCGCCGGCCACCGCAT 11431 29 100.0 32 ............................. ATCGCGTGCCATCTGCGACAGTTGGCACCGCC 11370 29 100.0 32 ............................. CTCTGCAAAATGTTCGATGGACGTAAGGCGCT 11309 29 100.0 32 ............................. AGGGAAGTTGTAGCGGCTTGTAGTAGGCGAGA 11248 29 100.0 32 ............................. CGGTTTCAACGTGTTTTCTATAAACGCGCGTT 11187 29 100.0 32 ............................. CTCGCCCATAACGACGGCACCGTTCGCACCGG 11126 29 100.0 32 ............................. GTTGCCGATGGCGTCCACAGCCATACCGATAC 11065 29 96.6 32 ............................A CCTATGGTCGATCAGATCACCCAAATGCTTGA 11004 29 100.0 32 ............................. GGCACGACCATAGCGTCTATGGCGATGACCGA 10943 29 100.0 32 ............................. TCAAGTCGGCGCTTGACGTGCAGGGCCTCGCC 10882 29 100.0 32 ............................. GTGTTCATCCACCTTATCGGCGGTCTGCATGG 10821 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 10760 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 10699 29 100.0 32 ............................. CATTCACATCACCGTAGAACTTGTCAAGGTCA 10638 29 100.0 32 ............................. TTCGCAATGGTCATGACGTCTTCGTAGCGTAA 10577 29 100.0 32 ............................. GCGGCTATGGGTATCGCCGGCATCGGCGGTAA 10516 29 100.0 32 ............................. GTGCGAACCATTGTTTTTGATGAGATTTTTCC 10455 29 100.0 32 ............................. TGGCCACGGATGTTGAACACGCCCCACACACC 10394 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 10333 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 10272 29 100.0 32 ............................. CGTCCTCCTTTCCATTTCTCTGGTGGGATTGG 10211 29 100.0 32 ............................. AGCAAGGATTCCGACAGGGACTGACCCGACCC 10150 29 100.0 32 ............................. ATCAGCCGGATCATCGAGAACGCGCCCGAGGA 10089 29 100.0 32 ............................. ACGACCGTCTGGTGGCATCACGCGCTGGTGCG 10028 29 100.0 32 ............................. ATACGGTCGGGGTCGGAGTCGGTGTCCTGCTC 9967 29 100.0 32 ............................. ACCATCAACATACATGCGGACGGGACCATGAC 9906 29 100.0 32 ............................. CATGCGAGCTGCGCTTCGCCGGCACGCTGTTG 9845 29 100.0 32 ............................. GCTGGGTCGCGGGCCGCAACATGGACTGGGGC 9784 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 109 29 99.8 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : CGTTGCCGTCCAAGCCCCAGCGACTTCCGCTGGTTTGCCTGTGTTTTGTCAAGTTGGAGTAGGCCGTTTCGGCGTTTCTTTTAGTCCATGTGAGCGGCGGGTTTCAGGCCGTTTCGGCGTTGGCCGGTCCTGCTGGTTGTTGGTTATTGCATTGGTTATTGCATGAGGGCGTGGGTCTTGCGCCAGGATTCGCCCTCGAAGCGGATCATCCGTCCGTGGTGGACGGTGCGGTCGATGATCGCGGCGGCCATGTTGGGGTCGCCGAAGATCCTGCCCCATCCGCTGAACTCGATGTTGGTGGTGTAGATGATGCTCTGGGTCTCGTACGCGTTGGTGACGACCTGGAACAGGAGCCTGCTGCCGTCCTCGTCGATGGGCACGTAGCCGAGTTCGTCGATGACGAGCAGCGGGGTCCTGCCGATCGCGGCGAGTTCCCGGTCGAGCCGGTTGTCCGATTGGGCCCTGAGGAGCCGCATGACCAGGCCTGCGGCGGTGAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //