Array 1 50920-51549 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJMB01000034.1 Rodentibacter pneumotropicus strain Ln316_4 contig_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     50920	    36	  80.6	    30	AA.C.GT.A.T.........................	TTGAGATAACTTCTCTTTATGACGATAATT	
     50986	    36	 100.0	    30	....................................	GGTATATAACCTCTTAACTTGCACACATTA	
     51052	    36	 100.0	    30	....................................	TAGTTTTTTTGTGTAATAAGATACATTAAT	
     51118	    36	 100.0	    30	....................................	AATGTTCTTCTGCACAGCTTGCTTTGTGAA	
     51184	    36	 100.0	    30	....................................	ACCCGGTAGTTCTTTAAGTTCTTTCTTAGT	
     51250	    36	 100.0	    30	....................................	CGCTAAAAGCTTTATTTGTGATAGCTGGTA	
     51316	    36	 100.0	    30	....................................	TTACTAGAATTTTACAAAGTTTATGTTGCA	
     51382	    36	 100.0	    30	....................................	TTAAAGTTTTTGTTTGCACTTACAATTATT	
     51448	    36	 100.0	    30	....................................	TTACTAGAATTTTTTGAAGTTTATGTCGCA	
     51514	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.1	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GTATCATGATACTTCTGAAATTTTTACCGGTGATTTACCGACCCCCATAAAATATTTCAACCCTGAAATTACCCAAGCCTATAAACAGATTGAGAGTGCAGCAGAACTCCATTTGATCAGCCTTCTCCCTCAAGAATTACAAGAAGATTTCGCTTCTTACCTAGACAGCGAAACTTTTTCGGATGAAGAGAAGCATCTAGTCAAACAAGCCGACCTCATTTGTGCCTATATTAAAGCCCAGTTTGAACTGGATAATGGCAATCAAGAATTTAAAACCGCTAAAACCAGACTTGAAGCCCTTATGCAACAGTGGCACAGCAAAGAAATGGATTATTTCTTACAGGTATTTATGCCAAGTTTTGGACGCTCTTTGGATGAGATTGCGTTGTGATTTAGAGAAAAGTGCGGTTGAGAATGAGGCTGTTTTTGATACTTTATTTAATAAGTAGAAAAGATTTTGATGTGAAGAGTCAAATTTTCATCAACTTGAATACTTTTAA
# Right flank :  TATGGAGAGCAAAAAGCCTTGAACTGTAAGGGTCCAAGGCTTTTTTATCAAAAGAAAAAACAGTTTAAAACAATAGAAGTTGATTAGAATTGACCTTTTTTTCTTGTAATTTTTTCTCTCCAACTAAAATTTCCATATTAGCAAATTGCTTTTCTGTGATAGCAATGCAGCGAATTGAACCTTCTTCCGGTAAATTTGCGACTAATCTTTTATGATGCTTTTCCATTGAATCTCTTCCTCTTACAATTCTTGTGTAAATAGATAGTTGTAGCATTTGATATCCATCCTTAAGTAAAAATTGGCGGAATTGATTTGCTGCTCGCATTTTTGCCTTAGTAGTAACCGGTAAATCGAATAATACTATCATACGCATGAAAATATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCCGGTAATTTTAGCAAATGGGCCTTTTTACTAATTAATGCAGCTTGCAAAGTGCCAACCATTCTATCAATTGCGGTTAACGT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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