Array 1 323344-322638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHB010000002.1 Listeria seeligeri strain FSL W9-0986 NODE_2_length_540349_cov_85.697684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 323343 27 89.7 0 .......C...................-- - Deletion [323317] 323316 29 100.0 37 ............................. ATGACCGAATTATTAAGAATAAGGAACGTTGGCGACC 323250 29 100.0 35 ............................. CTCGGAACGGAAGAAGAGGTGTATGTTTCGCTATT 323186 29 100.0 38 ............................. TTGTATTCAAATTGCAAGTGCGGATTATCAACAAAATC 323119 29 100.0 35 ............................. TCATCTTGATGTGCTACAACCAATCCGGTATATCC 323055 29 100.0 35 ............................. CAATGACCCCCGAAAGGAATGAATCCTATAGTCCG 322991 29 100.0 36 ............................. CCCTTTAAACCTGGCTCAGTCACATCAGTACGCATT 322926 29 100.0 37 ............................. ATTTTTATAGCATATCCGTATAGACGACCTGGCTTAC 322860 29 100.0 36 ............................. ATTAATTTCGGATGTTTTTTAGTACCACCCCATACT 322795 29 100.0 37 ............................. AAATCTATTGATACATCATGCCTAGAACGTCCACCCC 322729 29 93.1 34 ............C..........A..... AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT 322666 29 75.9 0 .......AC......CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.6 33 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCTAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGTGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCCTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCGCCCACCCTTAAAGCCAATAATCTGTTTTAAGGATTTTTCATCTAAAAACCACACCACAATCCTCCCATTTTTTTTCATCCAGCGAAAACCGTTTTTGAAATATTTGTAACCGCTCGCATGGATTATATGCAAGAAGAGAGCTATTATTTGTTAGATGCAAAAGAGGATGTTACATAGGTTTGAAGGATGGTGTGCGGGAAAGCGATTTAATTGGAGCACTTGAAGAAGCGCAAACCGGGGCAGTCAAGCTGGATGCAACACGTTACGTGAATACTTTCCCAGCAAAAAAACACGACCATTTCTTAATACCATCGGGGACTGTTCATTGTTCTGGCGCTGATTCGATGATTCTCGAAATAAGCTTATCTGCCTACATTTTTACATTTAAGCTGTGGGATTGGGGACGATTAGGCTTAGACGGCAAACCACGGCCAGTGCATATTGATCAGGAAAAAAAGTGATTAATTGGAACCGTTCTGAAAAATGGGTGGCGGAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 329786-329563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHB010000002.1 Listeria seeligeri strain FSL W9-0986 NODE_2_length_540349_cov_85.697684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 329785 29 100.0 35 ............................. TTGAAACTTTAATTATGATGCAGTACGGCTATTAT 329721 29 100.0 36 ............................. AGTTTTGTGGATGATTTCCATTGGAGACTTACCAAA 329656 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 329591 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 99.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6626-5402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHB010000004.1 Listeria seeligeri strain FSL W9-0986 NODE_4_length_297702_cov_105.085554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6625 36 100.0 30 .................................... GATAGAAGTTCTTCCGATGCTCACATTATC 6559 36 100.0 30 .................................... ATAGCACTATTAGAGAGTATGACCGAACAA 6493 36 100.0 30 .................................... AGGGATAAATTGGAAGAATCTATGAATGTT 6427 36 100.0 30 .................................... CTAAATTCGGCATGTCAAATCAGATGTTAG 6361 36 100.0 30 .................................... CAGTTTCCGTTTATACAATGTTACAGATTG 6295 36 100.0 30 .................................... TTTATATAAAAATTTAATAAAGGGAGAATT 6229 36 100.0 30 .................................... TAATTTCAAATAGGGGATGGTGTTATAATG 6163 36 100.0 30 .................................... TTTGCCTTTCGTCTGATTACTAATTAATGC 6097 36 100.0 30 .................................... ACAACAGGGAACGCAACATACTTACTCAAA 6031 36 100.0 30 .................................... TCGGTGTCATAGTTATATGGAACAGCTAAT 5965 36 100.0 30 .................................... CATATGATGCCCGTCTAGTCCGTCTAAAAG 5899 36 100.0 30 .................................... GCAACACAAACGAGAAGAAAAAACACTATT 5833 36 100.0 30 .................................... CTTCTCGACTCTGTGCAAATAGCTGTCGAA 5767 36 100.0 30 .................................... ATCGTCTTTATCAAAGATACCAGGTAACGA 5701 36 100.0 30 .................................... ATGTGCCACCAGTGCCGCCAACACAAATTA 5635 36 100.0 30 .................................... TAACAGGAACCCCCATCACGCAAGGCATGT 5569 36 97.2 30 ..C................................. TTTCCAATGTGGTACTAACCAGGAACGAAA 5503 36 100.0 30 .................................... TGCTTCTGTTTTTAATTCACCAACCATGTT 5437 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGCCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGGCTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //