Array 1 32829-32572 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000041.1 Nitritalea halalkaliphila LW7 Contig41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 32828 37 100.0 36 ..................................... AAGGATCGGAGAACTGCCTCTACGTGAGCTAGCACG 32755 37 100.0 36 ..................................... GATATAGATGATAGAACCATCTGCAAACTCTCCTAT 32682 37 100.0 36 ..................................... TCTAGTACATCTTTCTCAGCCATAATCATTCGCTAG 32609 37 83.8 0 ..............................CGCG.GA | T [32575] ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 96.0 36 GTCAGAGTACCACATCCATTAAAACAAGGATTAAGAC # Left flank : TTAAGTCCTTTTTGTATAAGGATTTAGGGACGATGGCGACGATTGGGCGCAAGAAGGCGGTGGTGGACTTGCCCTTTTTCAGTTTCCAGGGCTTTTTTGCGTGGCTGGCGTGGCTGTTTGTGCATTTGATGGCGATCGTGGGGGTGAAGAACCGTTTGTTTATCTTTTTGAATTGGGCCTGGAGTTATTTGTCTTTTGATGCCTCGCTGCGCTTGTTGATACGTCCGGTGCTGCCGAAGTTCGAGGCGGAGGAGGTTCAGGAGCGCATGGTGGAGGATCCGAAGGCAAAGGTAGATGAGAAGGTGTAGGTTTTTGGGGGATTTTGAGAGGAGGTTTTTAGGCTATAAAAATCTCCTGTTTTCCCTTGTGCGGGTGTTAAAAATACGGTACCTTTAGCCTAATGATAGTGCCTTTATGGAGTTTATGAACGTAAAACTAAAGATTTTTGACAAGGTTTTCATTTTTAACTCGTTGAAAATCACGCCATACTGGAGTTAGCT # Right flank : GCGGAAGGGAGCTGCGGCCAAGCAGCCCCGTTAGCGTACGTGCCGAACGGAGTGGTCTTCGGGAGAAGTCCACGTAGGGAGGTTGACAAGTGGTGTACTGTATCGAGTGGAGCAGTTTTATATATCTACTCGCTATACTGGGAGATGTGCTACCGGAGATTTTAGCTTCCGCGTCGATGCTGAATTTAGCTGTTGTTGTAATTTTCCTTTCCGCGGGTGTGCTTTGGGGCGTGTTTCGTGCCGCGGGCTGAAGCCGCGCGGTTACCAAAAGTTCCGCCCCCATGGGGCTCGGAGTGTTTTTACGTAATTCGATAATTGTTTAAATCGGGGTTCGAGAGGAGGTAGAGTGGTTATTATAGGATCCGTCTCTATGGGGCTCTTGATGCATTTACTTATATCGCTAATTTTTAAAATCGGGATTCGAGAGGAGGTAGAGTGGGTATCATAGGATCCGTCTCTATGGGGCTCGAAGTGTTTTTACGTAATTCGTTAATTATTGA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGTACCACATCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 421-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000126.1 Nitritalea halalkaliphila LW7 Contig126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 420 37 83.8 36 TC.CGCG.............................. AAAACACAAAAACATGCAAGTTATCAAAAAATTCTT G [410] 346 37 100.0 36 ..................................... GATAAAATCCTATCTAGTAAAGGAATTCTTATAGAA 273 37 100.0 36 ..................................... CTGAGGATATGAAAACTCAAGTCTTGTTTTCTCTAT 200 37 100.0 36 ..................................... CTAACTCTCAATTTCCAACATTGACAGTAGATAGAA 127 37 100.0 37 ..................................... ATATAAGCATTTTAACGGTATTGCTTATTATGCATCT 53 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.3 36 GTCTTAATCCTTGTTTTAGTGGATGGGGTACTCTGAC # Left flank : CGTCCGTTGTTTTAGAGGATGGGGTACGAAATCCTATTCCATGTGTAGAAAACTGGATCTATAAAACGGCACCATGCTCGATACAGCACAACACTCCTCAACCTCTCTACATGGCCTTCTCACGAAAGACCACTCCGTTCGGCACGTACGCTAACGGGGCTGCTTAGCCGCAGCTCCCTTCCG # Right flank : CAATCAGATTCTAAGCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAGTGGATGGGGTACTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 267-69 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000048.1 Nitritalea halalkaliphila LW7 Contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 266 46 100.0 29 .............................................. AAAACGTACTGAACGTGAAAGCGAACAAG 191 46 100.0 31 .............................................. CCTTGTCGAGATCGTCGTTGGCGAATCCATA 114 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 3 46 100.0 30 GCTGTGACTCTTAGACTAAGATACCAATTTGAGAGCAATTCACAAC # Left flank : GATTGTTTCGTAGGAGTTAGCAGGAAGATTAGTTATCCTGACTATGGAGGCTAATCATTTTTCAAGGCTAAATCAATATCGTTCTATGTGGGTACTTGTTTTCTTTGATTTGCCGACAGATACTAAGCGAGATCGTAAGGTGGCAGCTGGTTTTCGAAAAAAACTTTTAGAAGATGGTTTTGCGATGTTTCAGTTCTCCATTTACACGCGTTTTTGCCCAAGTCGGGAGAATGCTGATGTGCATATACGCCGGACAAAGATAAATCTTCCTCCAAAGGGAAAGGTAGGTATCATGGCCATTACGGATAGGCAATTTGGTATGATGGAGATTTTCTACGGAAAAAAGAAACAGGATACGGAGCCGCCCTCTCAGCAACTTGAATTATTTTAGGGCCAATATAAAGTAACCTTCTTGAACTTTGAAAGATTTTTTACGCTTACTTTTTTAATCCTGAAAATCAAGTTAAGTCACAGCTTACCAGCAGTTTAGACTGCGGTAA # Right flank : CCTGGATGAGCTGACTTHCTCGAATCACCACTGCCTATACGATGTACAGCACGTACGTCTGAGCATCGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGACTCTTAGACTAAGATACCAATTTGAGAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 56921-57086 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000042.1 Nitritalea halalkaliphila LW7 Contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 56921 32 100.0 41 ................................ ATTATGTTTCTAATACTAATCGCACCCATTGGAGTACCTCC 56994 32 100.0 44 ................................ CTCTTCCTCATGTCTTGATATAAAATAAATACATGATGCCTCCA 57070 17 53.1 0 .................--------------- | ========== ====== ====== ====== ================================ ============================================ ================== 3 32 84.4 43 CAAGGCAAATCCATCAAAACAAGGATTGAAAC # Left flank : GCGCCTCTTGACTATAAATTTGCCGAGTTTAAAGACCGGATATTTGATACTTATCGGCAACAATTAATCTGTTATGCCATATTGATCGAAGATAATTTTCATAAAAAGGTCAATAAAGGATACTTGGTCTATGTAAGAAGTAAGCATAAATTGGTGGAAGTTCTCATATCAGAAAAAGATAAAGAACTGGTAAAAAAGTCTATCACCAATATTCAGGAGATAATGGAGAATAACCACTTCCCTAAAGCTACCAAATACAAAAGAAGATGCTTATCTTGCACCTATAGAAACATCTGTATTCAATAATCCGCATGCCAACTTATTTTAGCATGAGCAAAAACCATAATTAAGACACTGTAAATCAACTAATTACACTAACGGAACATTATAAAAATATTCAATGAAAACGTTCTTTGACATATTGAAAAATGACAAAAAGTCAAAACAAAAATCTATATATAACATTGACTATGAGGCGTTTGAATCAGCAATCGGCCTCC # Right flank : | # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.22, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGGCAAATCCATCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 28-375 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000094.1 Nitritalea halalkaliphila LW7 Contig94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 28 46 100.0 30 .............................................. TGGATGGTGATCATAGTGTTTGGACTTATA 104 46 100.0 29 .............................................. TAGCTGCTCGGCTTGTTTAGTCTCGAAAG 179 46 100.0 30 .............................................. TAAAAGGCATGCCTGTATTACGGCCTATCA 255 46 100.0 29 .............................................. ACCGCGCTGGTTCGGATGGGGCAGGTGCG 330 46 82.6 0 ..........................GA.....C.T.T..T...GG | ========== ====== ====== ====== ============================================== ============================== ================== 5 46 96.5 30 GCTGTGACTCTTAGACTAAGATACCAATTTGAGAGCAATTCACAAC # Left flank : TATGTGGATAACTTTTTTTCCGACTCCG # Right flank : GGCATTAGCTCATACTATAAAATTACGCAATTAATAGCGAGCTGCTCTTTAACTCCTTTCTTACTGCCCTTGACTGTTTCCTTATTCTTCTGGTCTAAAGTGAGCAGTAAGTTTGTCAATGGTAAATTTATTTTTTAGTTTAAATACGCTGTTCTGATTGGCTCTCAGTCCACTTTCCCAGTATGTAGCATCATTGGGGTTGTCAATAAGCCATCTTACTTTAACAATATACTCCCCGTTTTCTAAGTCATCCATCTGTCTAGTGAACCTATCACATGTGAAATCGAGATCCTGTAGTGTACGTGTTTCATTGCCTTGCTTAATGGTAAATTGCTTGGCAGGAACGGCCGTTTCTTCTACTATGCCCACATTTACATAGCCTTGCTTTGGAATCATAGCGAAAACCCGTGCACCGACGAAAAGCTGCTTTAAAGAATTTGAATACCATCTGCCCCCTCCTGCTGAAATGATTCCATATTTTTTGCAGTCAGTCCAAGAAG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGACTCTTAGACTAAGATACCAATTTGAGAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 14270-14443 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJYA01000065.1 Nitritalea halalkaliphila LW7 Contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 14270 29 100.0 43 ............................. TGCAGCGGATTTGACTTGTGAGGGAATTCTAATTTGTTTCAAT 14342 29 100.0 44 ............................. AGGAGATCACGATACCCTATAGCGATGTGCTGCACAGTTTCAAT 14415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 3 29 100.0 44 CCTTGTTTTGATGGATTTGCCTTGGGAGG # Left flank : CGAGGGGAAAGAGATCTTGAATTTTCATGGTGGTAAAGTGGAATTAGGTCTTTCCCTCCCACACCACAATTATAAAGAAGCTAGGCGGTTGCTTGATAACCTTATACAGTTATACTCAGTTTATGGAGCATTACAACAGAAAGTACCTAGGCAGCAGGCTCTATGAAGCTCGAATATCTTTCTGGTCATGAAGTCTACATCTATTTTTCCGGGAAATAGGTTTGAAGACAGAATCAGTAATTGTTTTTATCGGACTCATGGGTTTTGGTGTTCCCGCCATAAGATTTTTCGTGTTAGCAGATGCTATAAAGATTCTGCTAAGAAACCACAACCATTTTAAAAGGGGGCAACCTACTCCGGAATGTCAGCATTCTGGCCTTTCAGGCTACTCTTACTCTTCAAAATCATTCCGCAGGTGAGGAGTCAACATGTTCCGGAATATCCACCTTGGGAGGTAGCTGTGCTTCGAACTCCCCCGAAGTGACCGCACAAGTTTCAGG # Right flank : TGAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTGTTTTGATGGATTTGCCTTGGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //