Array 1 22827-22498 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJT01000064.1 Erwinia amylovora strain OR6 NODE_4_length_229178_cov_62.5607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22826 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22766 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22706 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 22646 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 22586 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 22525 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35311-32290 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJT01000064.1 Erwinia amylovora strain OR6 NODE_4_length_229178_cov_62.5607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35310 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 35249 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 35188 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 35127 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 35066 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 35005 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 34944 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 34883 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 34822 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 34761 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 34700 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 34639 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 34578 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 34517 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 34456 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 34395 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 34334 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 34273 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 34212 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 34150 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 34089 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 34028 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 33967 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 33906 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 33845 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 33784 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33723 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 33662 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 33601 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 33540 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 33479 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 33418 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 33356 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 33295 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 33234 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 33173 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 33112 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 33051 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 32990 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 32929 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 32867 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 32806 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 32745 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 32684 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 32623 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 32562 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 32501 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 32440 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 32379 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 32318 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 50265-44350 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJT01000064.1 Erwinia amylovora strain OR6 NODE_4_length_229178_cov_62.5607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 50264 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 50203 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 50142 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 50081 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 50020 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 49959 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 49898 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 49837 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 49776 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 49715 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 49654 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 49593 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 49532 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 49471 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 49410 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 49349 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 49288 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 49227 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 49166 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 49105 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 49044 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 48983 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 48922 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 48861 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 48800 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 48739 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 48678 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 48617 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 48556 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 48495 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 48434 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 48373 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 48312 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 48251 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 48190 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 48129 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 48068 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 48008 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 47947 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 47886 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 47825 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 47764 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 47703 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 47642 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 47581 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 47520 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 47459 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 47398 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 47337 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 47276 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 47215 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 47154 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 47093 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 47032 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 46971 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 46910 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 46849 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 46788 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 46727 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 46666 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 46605 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 46544 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 46483 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 46422 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 46361 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 46300 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 46239 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 46178 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 46117 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 46056 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 45995 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 45934 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 45873 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 45812 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 45751 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 45690 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 45629 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 45568 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 45507 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 45446 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 45385 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 45324 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 45263 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 45202 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 45141 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 45080 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 45019 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 44958 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 44897 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 44805 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 44744 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 44683 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 44622 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 44561 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 44500 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 44439 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 44378 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 97 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //