Array 1 10511-9385 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCC01000012.1 Salmonella enterica subsp. enterica serovar Oslo strain 2010K-1591 NODE_12_length_53367_cov_4.93308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10510 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 10449 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 10388 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 10327 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 10266 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 10205 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 10144 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 10083 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 10022 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 9961 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 9900 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 9839 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 9778 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 9717 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 9656 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 9595 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 9534 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 9473 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 9412 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13829-11236 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCC01000073.1 Salmonella enterica subsp. enterica serovar Oslo strain 2010K-1591 NODE_73_length_20747_cov_4.51939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13828 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 13767 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 13706 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 13645 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 13584 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 13523 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 13462 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 13401 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 13340 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 13279 29 96.6 32 .................C........... TCCAGTGTTTATTTTAGACTCGCAACAATTAA 13218 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 13157 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 13096 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 13035 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 12974 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 12913 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 12852 29 100.0 32 ............................. CGGTTCCATTGACCCGCGCTGCGGGCTGTCCT 12791 29 100.0 32 ............................. CACGTTTCCTGCCTAATAAATGGATGATGTCG 12730 29 100.0 32 ............................. GACAGTGCCCTGCTGTTGGGCGGTGTCAGCAC 12669 29 100.0 32 ............................. CGTGGAACTTTATCCGCACAGATTTCCTGCGC 12608 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 12547 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 12486 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 12425 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 12364 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 12303 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 12242 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 12180 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 12119 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 12058 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 11997 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 11936 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 11875 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 11814 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 11753 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 11692 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 11631 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 11570 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 11509 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 11448 29 96.6 32 .................T........... CAAACTGTGATTATGTGCTGACTCAATCTTTT 11387 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 11326 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 11265 29 100.0 0 ............................. | A [11238] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //